Uses of Interface
org.biojava.nbio.core.sequence.location.template.Point
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Packages that use Point Package Description org.biojava.nbio.core.alignment org.biojava.nbio.core.alignment.template org.biojava.nbio.core.sequence.location org.biojava.nbio.core.sequence.location.template -
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Uses of Point in org.biojava.nbio.core.alignment
Methods in org.biojava.nbio.core.alignment that return Point Modifier and Type Method Description Point
SimpleAlignedSequence. getEnd()
Point
SimpleAlignedSequence. getStart()
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Uses of Point in org.biojava.nbio.core.alignment.template
Methods in org.biojava.nbio.core.alignment.template that return Point Modifier and Type Method Description Point
AlignedSequence. getEnd()
Point
AlignedSequence. getStart()
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Uses of Point in org.biojava.nbio.core.sequence.location
Classes in org.biojava.nbio.core.sequence.location that implement Point Modifier and Type Class Description class
FuzzyPoint
Implementation for resolving fuzzy locations.class
SimplePoint
Basic implementation of the Point interface.Methods in org.biojava.nbio.core.sequence.location that return Point Modifier and Type Method Description Point
SimplePoint. clonePoint()
static Point
LocationHelper. detectEnd(List<Location> subLocations, boolean isCircular)
This will attempt to find what the last point is and returns that position.static Point
LocationHelper. detectStart(List<Location> subLocations)
Assumes that the first element is the start & clones itPoint
FuzzyPoint. offset(int distance)
Point
SimplePoint. offset(int distance)
Point
FuzzyPoint. reverse(int length)
Point
SimplePoint. reverse(int length)
Methods in org.biojava.nbio.core.sequence.location with parameters of type Point Modifier and Type Method Description int
FuzzyPoint. compareTo(Point point)
int
SimplePoint. compareTo(Point o)
boolean
SimplePoint. isHigher(Point point)
boolean
SimplePoint. isLower(Point point)
Constructors in org.biojava.nbio.core.sequence.location with parameters of type Point Constructor Description GroupLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations)
GroupLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)
GroupLocation(Point start, Point end, Strand strand, List<Location> subLocations)
GroupLocation(Point start, Point end, Strand strand, Location... subLocations)
OrderLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations)
OrderLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)
OrderLocation(Point start, Point end, Strand strand, List<Location> subLocations)
OrderLocation(Point start, Point end, Strand strand, Location... subLocations)
SequenceLocation(Point start, Point end, S sequence, Strand strand)
SimpleLocation(Point start, Point end)
SimpleLocation(Point start, Point end, Strand strand)
SimpleLocation(Point start, Point end, Strand strand, boolean circular, boolean betweenBases)
SimpleLocation(Point start, Point end, Strand strand, boolean circular, boolean betweenBases, List<Location> subLocations)
SimpleLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations)
SimpleLocation(Point start, Point end, Strand strand, boolean betweenCompounds, AccessionID accession)
SimpleLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)
SimpleLocation(Point start, Point end, Strand strand, List<Location> subLocations)
SimpleLocation(Point start, Point end, Strand strand, AccessionID accession)
SimpleLocation(Point start, Point end, Strand strand, Location... subLocations)
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Uses of Point in org.biojava.nbio.core.sequence.location.template
Classes in org.biojava.nbio.core.sequence.location.template with type parameters of type Point Modifier and Type Interface Description static interface
Point.Resolver<T extends Point>
Used to resolve a position about a pointMethods in org.biojava.nbio.core.sequence.location.template that return Point Modifier and Type Method Description Point
Point. clonePoint()
Returns a copy of this pointPoint
AbstractLocation. getEnd()
Point
Location. getEnd()
End of the locationPoint
AbstractLocation. getStart()
Point
Location. getStart()
Start of the locationPoint
Point. offset(int distance)
Returns a new point offset by the given distancePoint
Point. reverse(int length)
Returns the equivalent position on the reverse strandMethods in org.biojava.nbio.core.sequence.location.template with parameters of type Point Modifier and Type Method Description boolean
Point. isHigher(Point point)
Returns true if the point is higher in value to the current pointboolean
Point. isLower(Point point)
Returns true if the current point is at a lower position than the point given.protected void
AbstractLocation. setEnd(Point end)
protected void
AbstractLocation. setStart(Point start)
Constructors in org.biojava.nbio.core.sequence.location.template with parameters of type Point Constructor Description AbstractLocation(Point start, Point end, Strand strand, boolean circular, boolean betweenCompounds, List<Location> subLocations)
Default constructorAbstractLocation(Point start, Point end, Strand strand, boolean circular, boolean betweenCompounds, AccessionID accession, List<Location> subLocations)
Default constructor
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