Uses of Class
org.biojava.nbio.structure.GroupType
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Packages that use GroupType Package Description org.biojava.nbio.structure -
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Uses of GroupType in org.biojava.nbio.structure
Fields in org.biojava.nbio.structure declared as GroupType Modifier and Type Field Description static GroupType
AminoAcidImpl. type
this is an Amino acid. type is "amino".static GroupType
HetatomImpl. type
The GroupType is HETATMstatic GroupType
NucleotideImpl. type
this is a "nucleotide", a special occurance of a Hetatom.Methods in org.biojava.nbio.structure that return GroupType Modifier and Type Method Description GroupType
Chain. getPredominantGroupType()
Get the predominantGroupType
for a given Chain, following these rules: if the ratio of number of residues of a certainGroupType
to total non-water residues is above the threshold 0.95, then thatGroupType
is returned if there is noGroupType
that is above the threshold then theGroupType
with most members is chosen, logging itGroupType
ChainImpl. getPredominantGroupType()
GroupType
AminoAcidImpl. getType()
GroupType
Group. getType()
GroupType
HetatomImpl. getType()
GroupType
NucleotideImpl. getType()
static GroupType
GroupType. valueOf(String name)
Returns the enum constant of this type with the specified name.static GroupType[]
GroupType. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in org.biojava.nbio.structure with parameters of type GroupType Modifier and Type Method Description static Set<Group>
StructureTools. getAllGroupsFromSubset(Atom[] atoms, GroupType types)
Expand a set of atoms into all groups from the same structure.List<Group>
Chain. getAtomGroups(GroupType type)
List<Group>
ChainImpl. getAtomGroups(GroupType type)
List<Group>
Chain. getSeqResGroups(GroupType type)
List<Group>
ChainImpl. getSeqResGroups(GroupType type)
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