Uses of Class
org.biojava.bio.chromatogram.graphic.ChromatogramGraphic.Option

Packages that use ChromatogramGraphic.Option

Package	Description
org.biojava.bio.chromatogram.graphic	Tools for displaying chromatograms.

Uses of ChromatogramGraphic.Option in org.biojava.bio.chromatogram.graphic

Fields in org.biojava.bio.chromatogram.graphic declared as ChromatogramGraphic.Option

Modifier and Type	Field and Description
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_CALL_A Option indicating whether to fill in the callboxes for calls of nucleotide A.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_CALL_C Option indicating whether to fill in the callboxes for calls of nucleotide C.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_CALL_G Option indicating whether to fill in the callboxes for calls of nucleotide G.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_CALL_OTHER Option indicating whether to fill in the callboxes for non-base calls (gaps, ambiguities).
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_CALL_SEPARATORS Option indicating whether to draw vertical lines separating the calls.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_CALL_T Option indicating whether to fill in the callboxes for calls of nucleotide T.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_TRACE_A Option indicating whether to draw the chromatogram trace for nucleotide A.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_TRACE_C Option indicating whether to draw the chromatogram trace for nucleotide C.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_TRACE_G Option indicating whether to draw the chromatogram trace for nucleotide G.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.DRAW_TRACE_T Option indicating whether to draw the chromatogram trace for nucleotide T.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.FROM_TRACE_SAMPLE Option indicating the lowest (leftmost) trace sample that should be drawn.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.HEIGHT_IS_AUTHORITATIVE Option indicating whether height or vertical scale is the authoritative measure.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.HORIZONTAL_NONLINEAR_SCALER Option specifying the non-linear scaling function to apply, as embodied in a ChromatogramNonlinearScaler object.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.SEPARATOR_COLOR Option indicating the color that the call separators should be.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.SEPARATOR_STROKE Option providing the the stroke to use for drawing call separators.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.SUBPATH_LENGTH To improve performance, the drawing objects for the chromatogram traces are precomputed.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.TO_TRACE_SAMPLE Option indicating the highest (rightmost) trace sample that should be drawn.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.TRACE_STROKE Option providing the the stroke to use for drawing the chromatogram traces.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.USE_CUSTOM_STROKE Option indicating whether to use custom strokes when drawing traces and separators.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.USE_PER_SHAPE_TRANSFORM Option indicating whether to apply scaling and translation transforms to each shape individually or to apply a single transform to the graphics context.
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.WIDTH_IS_AUTHORITATIVE Option indicating whether width or horizontal scale is the authoritative measure.

Methods in org.biojava.bio.chromatogram.graphic that return ChromatogramGraphic.Option

Modifier and Type	Method and Description
static ChromatogramGraphic.Option	ChromatogramGraphic.Option.lookup(String desc) Looks up an Option instance based on its string description.

Methods in org.biojava.bio.chromatogram.graphic with parameters of type ChromatogramGraphic.Option

Modifier and Type	Method and Description
float	ChromatogramGraphic.getFloatOption(ChromatogramGraphic.Option opt) Helper method for converting a Number-valued option into a float primitive.
int	ChromatogramGraphic.getIntOption(ChromatogramGraphic.Option opt) Helper method for converting a Number-valued option into an int primitive.
Object	ChromatogramGraphic.getOption(ChromatogramGraphic.Option opt) Returns the current value for the specified option.
boolean	ChromatogramGraphic.optionIsTrue(ChromatogramGraphic.Option opt) Helper method for converting a Boolean-valued option into a boolean primitive.
void	ChromatogramGraphic.setOption(ChromatogramGraphic.Option opt, Object value) Sets a new value for the specified option.