org.biojava.bio.dp

Interface ModelTrainer

All Superinterfaces:

DistributionTrainerContext

All Known Implementing Classes:

SimpleModelTrainer

public interface ModelTrainer
extends DistributionTrainerContext

Encapsulates the training of an entire model.

Author:

Matthew Pocock

Method Summary

Methods

Modifier and Type	Method and Description
void	registerModel(MarkovModel model) Registers an HMM with this trainer.

Methods inherited from interface org.biojava.bio.dist.DistributionTrainerContext

addCount, clearCounts, getCount, getNullModelWeight, getTrainer, registerDistribution, registerTrainer, setNullModelWeight, train

Method Detail

registerModel

void registerModel(MarkovModel model)

Registers an HMM with this trainer.

If the model has been already registered, then this method should do nothing. If it has not been registered, then this method should loop over every state in the model and register the Distribution returned by getWeight.

Parameters:

model - the MarkovModel to train