Uses of Class
org.biojava.bio.dp.BackPointer

Packages that use BackPointer

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.twohead

Uses of BackPointer in org.biojava.bio.dp

Fields in org.biojava.bio.dp declared as BackPointer

Modifier and Type	Field and Description
BackPointer	BackPointer.back The previous backpointer (towards origin of DP matrix) in traceback.

Constructors in org.biojava.bio.dp with parameters of type BackPointer

Constructor and Description
BackPointer(State state, BackPointer back, double score)

Uses of BackPointer in org.biojava.bio.dp.twohead

Fields in org.biojava.bio.dp.twohead declared as BackPointer

Modifier and Type	Field and Description
BackPointer[]	Cell.backPointers
protected BackPointer[][][]	LightPairDPCursor.bPointers Description of the Field
protected BackPointer[][][]	AbstractMatrixPairDPCursor.bPointers
protected BackPointer[]	LightPairDPCursor.emptyBP Description of the Field
protected BackPointer[]	AbstractMatrixPairDPCursor.emptyBP

Methods in org.biojava.bio.dp.twohead with parameters of type BackPointer

Modifier and Type	Method and Description
CellCalculator	DPInterpreter.viterbi(ScoreType scoreType, BackPointer terminal)
CellCalculator	CellCalculatorFactory.viterbi(ScoreType scoreType, BackPointer terminal)