Uses of Interface
org.biojava.bio.dp.ModelTrainer

Packages that use ModelTrainer

Package	Description
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.

Uses of ModelTrainer in org.biojava.bio.dist

Methods in org.biojava.bio.dist with parameters of type ModelTrainer

Modifier and Type	Method and Description
void	PairDistribution.registerWithTrainer(ModelTrainer trainer) Register this paired distribution with a model trainer.

Uses of ModelTrainer in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement ModelTrainer

Modifier and Type	Class and Description
class	SimpleModelTrainer

Methods in org.biojava.bio.dp with parameters of type ModelTrainer

Modifier and Type	Method and Description
void	WMAsMM.registerWithTrainer(ModelTrainer modelTrainer)
void	Trainable.registerWithTrainer(ModelTrainer mt) Perform any registration that is necessary with mt.
void	SimpleEmissionState.registerWithTrainer(ModelTrainer trainer)
protected double	BaumWelchTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
protected double	BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
protected abstract double	AbstractTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
protected double	BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList, ScoreType scoreType)