org.biojava.bio.dp.twohead

Class Cell

java.lang.Object

org.biojava.bio.dp.twohead.Cell

public final class Cell
extends Object

A single cell in the DP matrix.

The cell is divided into parallel arrays for the cell scores, backpointers and emission probabilities. The scores and backpointer arrays are as long as the number of states in the model. The emissions array is as long as the number of emitting states in the model.

Since:

1.2

Author:

Matthew Pocock

Field Summary

Fields

Modifier and Type	Field and Description
BackPointer[]	backPointers
double[]	emissions
double[]	scores

Constructor Summary

Constructors

Constructor and Description
Cell()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

scores

public double[] scores

backPointers

public BackPointer[] backPointers

emissions

public double[] emissions

Constructor Detail

Cell

public Cell()