Uses of Class
org.biojava.bio.dp.twohead.EmissionCache

Packages that use EmissionCache

Package	Description
org.biojava.bio.dp.twohead

Uses of EmissionCache in org.biojava.bio.dp.twohead

Fields in org.biojava.bio.dp.twohead declared as EmissionCache

Modifier and Type	Field and Description
protected EmissionCache	LightPairDPCursor.eCache Description of the Field
protected EmissionCache	AbstractMatrixPairDPCursor.eCache

Constructors in org.biojava.bio.dp.twohead with parameters of type EmissionCache

Constructor and Description
AbstractMatrixPairDPCursor(SymbolList seq1, SymbolList seq2, int start1, int start2, int depth1, int depth2, PairDPMatrix matrix, EmissionCache eCache)
BackMatrixPairDPCursor(SymbolList seq1, SymbolList seq2, int depth1, int depth2, PairDPMatrix matrix, EmissionCache eCache)
LightPairDPCursor(SymbolList seq1, SymbolList seq2, int depth1, int depth2, int numStates, EmissionCache eCache) Constructor for the LightPairDPCursor object
MatrixPairDPCursor(SymbolList seq1, SymbolList seq2, int depth1, int depth2, PairDPMatrix matrix, EmissionCache eCache)