Uses of Interface
org.biojava.bio.program.gff3.GFF3DocumentHandler

Packages that use GFF3DocumentHandler

Package	Description
org.biojava.bio.program.gff3	Support for reading and writing GFF3.

Uses of GFF3DocumentHandler in org.biojava.bio.program.gff3

Methods in org.biojava.bio.program.gff3 with parameters of type GFF3DocumentHandler

Modifier and Type	Method and Description
protected GFF3Record	GFF3Parser.createRecord(GFF3DocumentHandler handler, List aList, String rest, String comment, Ontology ontology, Ontology fallBack) Actually turns a list of tokens, some value string and a comment into a GFF3Record and informs handler.
void	GFF3Parser.parse(BufferedReader bReader, GFF3DocumentHandler handler, Ontology ontology) Informs handler of each line of gff read from bReader.
void	GFF3Parser.parse(BufferedReader bReader, GFF3DocumentHandler handler, Ontology ontology, String locator) Informs handler of each line of GFF read from bReader