org.biojava.bio.seq.filter

Class FilterTransformer

java.lang.Object

org.biojava.bio.seq.filter.FilterTransformer

All Implemented Interfaces:

Visitor

public class FilterTransformer
extends Object
implements Visitor

Base-class for visitors that re-write a filter tree.

This filter transformer will just duplicate a tree, using the same leaf instances, and re-creating all logical filters, like And and ByDescendant.

Author:

Matthew Pocock

Constructor Summary

Constructors

Constructor and Description
FilterTransformer()

Method Summary

Methods

Modifier and Type	Method and Description
FeatureFilter	and(FeatureFilter.And and, FeatureFilter c1, FeatureFilter c2)
FeatureFilter	byAncestor(FeatureFilter.ByAncestor ancestor, FeatureFilter c)
FeatureFilter	byChild(FeatureFilter.ByChild child, FeatureFilter c)
FeatureFilter	byDescendant(FeatureFilter.ByDescendant desc, FeatureFilter c)
FeatureFilter	byParent(FeatureFilter.ByParent parent, FeatureFilter c)
FeatureFilter	featureFilter(FeatureFilter filter)
FeatureFilter	not(FeatureFilter.Not not, FeatureFilter c)
FeatureFilter	onlyChildren(FeatureFilter.OnlyChildren child, FeatureFilter c)
FeatureFilter	onlyDescendants(FeatureFilter.OnlyDescendants desc, FeatureFilter c)
FeatureFilter	or(FeatureFilter.Or or, FeatureFilter c1, FeatureFilter c2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FilterTransformer

public FilterTransformer()

Method Detail

featureFilter

public FeatureFilter featureFilter(FeatureFilter filter)

and

public FeatureFilter and(FeatureFilter.And and,
                FeatureFilter c1,
                FeatureFilter c2)

or

public FeatureFilter or(FeatureFilter.Or or,
               FeatureFilter c1,
               FeatureFilter c2)

not

public FeatureFilter not(FeatureFilter.Not not,
                FeatureFilter c)

byParent

public FeatureFilter byParent(FeatureFilter.ByParent parent,
                     FeatureFilter c)

byAncestor

public FeatureFilter byAncestor(FeatureFilter.ByAncestor ancestor,
                       FeatureFilter c)

onlyChildren

public FeatureFilter onlyChildren(FeatureFilter.OnlyChildren child,
                         FeatureFilter c)

onlyDescendants

public FeatureFilter onlyDescendants(FeatureFilter.OnlyDescendants desc,
                            FeatureFilter c)

byChild

public FeatureFilter byChild(FeatureFilter.ByChild child,
                    FeatureFilter c)

byDescendant

public FeatureFilter byDescendant(FeatureFilter.ByDescendant desc,
                         FeatureFilter c)