public class Embl2AgaveAnnotFilter extends SimpleAnnotFilter
Modifier and Type | Field and Description |
---|---|
static AGAVEAnnotFilterFactory |
EMBL_AGAVE_ANNOT_FILTER_FACTORY |
SIMPLE_ANNOT_FILTER_FACTORY
BOTH_FORWARD_COMPLEMENT, COMPLEMENT, FORWARD
Modifier and Type | Method and Description |
---|---|
String |
getAccession(Annotation annot) |
AGAVEDbId |
getDbId(Annotation annot) |
String |
getDescription(Annotation annot) |
String |
getKeyword(Annotation annot) |
String |
getMolType(Annotation annot) |
String |
getNote(Annotation annot) |
String |
getOrganism(Annotation annot) |
String |
getOS(Annotation annot) |
String |
getVersion(Annotation annot) |
getAlignLength, getAlignUnits, getAltIds, getChromNum, getChromosome, getClassifyId, getClassifySystem, getClassifyType, getCloneId, getCloneLibrary, getConfidence, getCreateDate, getEcNumber, getElementId, getElementIds, getExonIds, getFeatureType, getGroupOrder, getIdAlias, getLabel, getMapLocation, getMapPosition, getMatchAlign, getMatchDesc, getMatchRegion, getProperty, getQueryRegion, getRelatedAnnot, getResultType, getSequenceId, getTaxonId, getUpdateDate, getXrefs
public static final AGAVEAnnotFilterFactory EMBL_AGAVE_ANNOT_FILTER_FACTORY
public String getAccession(Annotation annot)
getAccession
in interface AGAVEAnnotFilter
getAccession
in class SimpleAnnotFilter
public String getKeyword(Annotation annot)
getKeyword
in interface AGAVEAnnotFilter
getKeyword
in class SimpleAnnotFilter
public String getOrganism(Annotation annot)
getOrganism
in interface AGAVEAnnotFilter
getOrganism
in class SimpleAnnotFilter
public String getDescription(Annotation annot)
getDescription
in interface AGAVEAnnotFilter
getDescription
in class SimpleAnnotFilter
public String getNote(Annotation annot)
getNote
in interface AGAVEAnnotFilter
getNote
in class SimpleAnnotFilter
public String getVersion(Annotation annot)
getVersion
in interface AGAVEAnnotFilter
getVersion
in class SimpleAnnotFilter
public String getOS(Annotation annot)
getOS
in interface AGAVEAnnotFilter
getOS
in class SimpleAnnotFilter
public String getMolType(Annotation annot)
getMolType
in interface AGAVEAnnotFilter
getMolType
in class SimpleAnnotFilter
public AGAVEDbId getDbId(Annotation annot)
getDbId
in interface AGAVEAnnotFilter
getDbId
in class SimpleAnnotFilter
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