Package | Description |
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org.biojava.bio.seq.io.agave |
Classes for converting between AGAVE XML and BioJava objects.
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Modifier and Type | Class and Description |
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class |
Agave2AgaveAnnotFilter
Dumping the data from biojava with source of agave into agave format
|
class |
Embl2AgaveAnnotFilter
Map EMBL data into AGAVE format
|
class |
SimpleAnnotFilter
Basic implementation of AGAVEAnnotFilter
|
Modifier and Type | Field and Description |
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protected AGAVEAnnotFilter |
AgaveWriter.mAnnotFilter
The AnnotationMap to use for getting
AGAVE XML attributes from a Sequence Annotation.
|
Modifier and Type | Method and Description |
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AGAVEAnnotFilter |
AGAVEAnnotFilterFactory.getInstance() |
Constructor and Description |
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AgaveWriter(AGAVEAnnotFilter filter)
Construct with data source specific annotation to attribute
mapping.
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