Uses of Package
org.biojava.directory

Packages that use org.biojava.directory

Package	Description
org.biojava.bio.seq.db.biofetch	Client for the OBDA BioFetch protocol.
org.biojava.bio.seq.db.biosql	General purpose Sequence storage in a relational database.
org.biojava.bio.seq.db.flat	Support for OBDA flatfile databases.
org.biojava.directory	Open Bio Sequence Database Access (OBDA) registry support.

Classes in org.biojava.directory used by org.biojava.bio.seq.db.biofetch

Class and Description
RegistryException A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.
SequenceDBProvider Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Classes in org.biojava.directory used by org.biojava.bio.seq.db.biosql

Class and Description
RegistryException A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.
SequenceDBProvider Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Classes in org.biojava.directory used by org.biojava.bio.seq.db.flat

Class and Description
RegistryException A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.
SequenceDBProvider Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.

Classes in org.biojava.directory used by org.biojava.directory

Class and Description
Registry Registry is a factory which gets implementations of the BioJava SequenceDBLite interface.
RegistryConfiguration The BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases.
RegistryException A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.