| Interface | Description |
|---|---|
| BioSQLFeatureFilter |
A filter for accepting or rejecting a feature.
|
| Class | Description |
|---|---|
| BioSQLAcceptAllFilter |
The class that accepts all features.
|
| BioSQLAcceptNoneFilter |
The class that accepts no features.
|
| BioSQLBioEntryDB | |
| BioSQLCrossReferenceResolver |
A simple implementation of CrossReferenceResolver
|
| BioSQLFeatureFilter.And |
A filter that returns all features accepted by both child filter.
|
| BioSQLFeatureFilter.ByName |
Construct one of these to filter features by display name.
|
| BioSQLFeatureFilter.ByNote |
A filter that returns all features that have the given note, and
the value and rank is checked as well.
|
| BioSQLFeatureFilter.ByNoteTermOnly |
A filter that returns all features that have a note with the given term.
|
| BioSQLFeatureFilter.ByRank |
Construct one of these to filter features by rank.
|
| BioSQLFeatureFilter.BySequenceName |
Accept features that reside on a sequence with a particular name.
|
| BioSQLFeatureFilter.BySourceTerm |
Construct one of these to filter features by source.
|
| BioSQLFeatureFilter.BySourceTermName |
Construct one of these to filter features by source (name only - parent ontology
is ignored).
|
| BioSQLFeatureFilter.ByStrand |
A filter that returns all features having locations on a given strand.
|
| BioSQLFeatureFilter.ByTypeTerm |
Construct one of these to filter features by type.
|
| BioSQLFeatureFilter.ByTypeTermName |
Construct one of these to filter features by type (name only - parent ontology
is ignored).
|
| BioSQLFeatureFilter.ContainedByRichLocation |
A filter that returns all features contained within a location.
|
| BioSQLFeatureFilter.HibernateFeatureFilter |
A filter for Hibernate-BioSQL filters to extend.
|
| BioSQLFeatureFilter.Not |
A filter that returns all features not accepted by a child filter.
|
| BioSQLFeatureFilter.Or |
A filter that returns all features accepted by at least one child filter.
|
| BioSQLFeatureFilter.OverlapsRichLocation |
A filter that returns all features overlapping a location.
|
| BioSQLFeatureFilter.Tools |
A class representing some useful stuff you can do with BioSQLFeatureFilters,
for instance converting plain FeatureFilters into a their BioSQLFeatureFilter
equivalents (where possible).
|
| BioSQLRichObjectBuilder |
Takes requests for RichObjects and sees if it can load them from a Hibernate
database.
|
| BioSQLRichSequenceDB | |
| BioSQLRichSequenceHandler |
A handler which loads sequence data from a BioSQL database, caching it where possible.
|
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