org.biojavax.ga.impl

Class SimplePopulation

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojavax.ga.impl.AbstractPopulation

org.biojavax.ga.impl.SimplePopulation

All Implemented Interfaces:

Changeable, Population

public final class SimplePopulation
extends AbstractPopulation

Simple concrete implementation of the Population interface

Internally the SimplePopulation store Organisms in a HashMap

Since:

1.5

Version:

1.0

Author:

Mark Schreiber

Field Summary

Fields inherited from interface org.biojavax.ga.Population

NAME, ORGANISMS

Constructor Summary

Constructors

Constructor and Description
SimplePopulation()
SimplePopulation(String name)

Method Summary

Methods

Modifier and Type	Method and Description
protected void	addOrganismImpl(Organism orgToAdd)
Organism	getOrganismByName(String name) Gets the specified organism
Set	getOrganisms() Gets the Set of Organisms
Iterator	organisms()
protected void	removeAllOrganismsImpl()
protected void	removeOrganismImpl(Organism orgToRemove)
int	size() Gets the Size of the population

Methods inherited from class org.biojavax.ga.impl.AbstractPopulation

addOrganism, addOrganisms, addOrganisms, addOrganisms, getName, removeAllOrganisms, removeOrganism, removeOrganisms, removeOrganisms, setName

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

SimplePopulation

public SimplePopulation(String name)

SimplePopulation

public SimplePopulation()

Method Detail

addOrganismImpl

protected void addOrganismImpl(Organism orgToAdd)
                        throws IllegalOrganismException

Specified by:

addOrganismImpl in class AbstractPopulation

Throws:

IllegalOrganismException

removeOrganismImpl

protected void removeOrganismImpl(Organism orgToRemove)

Specified by:

removeOrganismImpl in class AbstractPopulation

removeAllOrganismsImpl

protected void removeAllOrganismsImpl()

Specified by:

removeAllOrganismsImpl in class AbstractPopulation

getOrganismByName

public Organism getOrganismByName(String name)

Description copied from interface: Population

Gets the specified organism

Parameters:

name - the name of the organism to retreive

Returns:

the organism named or null if that organism doesn't exist.

size

public int size()

Description copied from interface: Population

Gets the Size of the population

Returns:

the size

organisms

public Iterator organisms()

Returns:

an iterator over the set of Organisms.

getOrganisms

public Set getOrganisms()

Description copied from interface: Population

Gets the Set of Organisms

Returns:

a Set