001 /**
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 */
021package org.biojava.bio.seq.io.agave;
022
023/**
024 *
025 * unordered_fragments
026 *
027 *
028 * @author Hanning Ni    Doubletwist Inc
029 * 
030 */
031public class AGAVEUnorderedFragmentsHandler
032               extends StAXFeatureHandler
033
034{
035  public static final StAXHandlerFactory AGAVE_UNORDERED_FRAGMENTS_HANDLER_FACTORY
036    = new StAXHandlerFactory() {
037    public StAXContentHandler getHandler(StAXFeatureHandler staxenv) {
038      return new AGAVEUnorderedFragmentsHandler(staxenv);
039    }
040  };
041
042
043  AGAVEUnorderedFragmentsHandler(StAXFeatureHandler staxenv) {
044    // setup up environment stuff
045    super( staxenv );
046    featureListener = staxenv.featureListener;
047    setHandlerCharacteristics("unordered_fragment", true);
048
049    // setup handlers
050        //
051       super.addHandler(new ElementRecognizer.ByLocalName("bio_sequence"),
052         AGAVEBioSeqHandler.AGAVE_BIO_SEQ_HANDLER_FACTORY);
053
054  }
055
056
057}