org.biojava.nbio.alignment.template
Interfaces
Aligner
GapPenalty
GuideTreeNode
HierarchicalClusterer
MatrixAligner
PairInProfileScorer
PairwiseSequenceAligner
PairwiseSequenceScorer
PartitionRefiner
ProfileProfileAligner
ProfileProfileScorer
RescoreRefiner
Scorer
Classes
AbstractMatrixAligner
AbstractPairwiseSequenceAligner
AbstractProfileProfileAligner
AbstractScorer
CallablePairwiseSequenceAligner
CallablePairwiseSequenceScorer
CallableProfileProfileAligner
Enums
GapPenalty.Type