Package | Description |
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org.biojava.nbio.core.sequence.io | |
org.biojava.nbio.core.sequence.loader |
Modifier and Type | Class and Description |
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class |
FastaSequenceParser
Used to parse a stream of a fasta file to get the sequence
|
class |
GenbankSequenceParser<S extends AbstractSequence<C>,C extends Compound> |
Constructor and Description |
---|
FileProxyDNASequenceCreator(File file,
CompoundSet<NucleotideCompound> compoundSet,
SequenceParserInterface sequenceParser)
Need File so that we can store full path name in SequenceFileProxyLoader for Random File access as a quick read
|
FileProxyProteinSequenceCreator(File file,
CompoundSet<AminoAcidCompound> compoundSet,
SequenceParserInterface sequenceParser)
Need File so that we can store full path name in SequenceFileProxyLoader for Random File access as a quick read
|
Constructor and Description |
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SequenceFileProxyLoader(File file,
SequenceParserInterface sequenceParser,
long sequenceStartIndex,
int sequenceLength,
CompoundSet<C> compoundSet) |
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