A method to decide the order of symmetry (number of subunits) given a structure self-alignment, calculated by CE-Symm.
Interface for all symmetry refinement implementations.
Guesses an order of rotational symmetry from the angle.
Identify the symmetries in a structure by running an alignment of the structure against itself disabling the diagonal of the identity alignment.
Iterative version of CeSymm that aims at identifying all symmetry axis (internal or quaternary) of a particular structure.
Provides parameters to
This Class stores all the relevant information of an internal symmetry result obtained with CeSymm.
The GraphOrderDetector transforms the self-alignment into a Graph and extracts its maximally connected Components.
The GraphRefiner transforms the self-alignment into a Graph and extracts its maximally connected Components.
A ResidueGroup is a set of residues that are part of a maximally connected component of the self-Alignment Graph in symmetry analysis.
Calls Spencer's method for determining order.
Creates a refined alignment with the CE-Symm alternative self-alignment.
Data Structure that stores all the symmetry axis that describe the symmetry of a structure.
Optimizes a symmetry alignment by a Monte Carlo score optimization of the repeat multiple alignment.
The internal symmetry detection can be divided into two types: CLOSE: includes the circular and dihedral symmetries, and OPEN: includes the helical and protein repeats symmetries.
Refinement of the self-alignment failed.
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