public class FastaGeneWriter extends Object
Constructor and Description |
---|
FastaGeneWriter(OutputStream os,
Collection<GeneSequence> sequences,
FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat,
boolean showExonUppercase) |
FastaGeneWriter(OutputStream os,
Collection<GeneSequence> sequences,
FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat,
boolean showExonUppercase,
int lineLength) |
Modifier and Type | Method and Description |
---|---|
int |
getLineLength() |
static void |
main(String[] args) |
void |
process() |
void |
setLineLength(int lineLength) |
public FastaGeneWriter(OutputStream os, Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase)
os
- sequences
- headerFormat
- showExonUppercase
- public FastaGeneWriter(OutputStream os, Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase, int lineLength)
os
- sequences
- headerFormat
- showExonUppercase
- lineLength
- public int getLineLength()
public void setLineLength(int lineLength)
lineLength
- the lineLength to setCopyright © 2000–2017 BioJava. All rights reserved.