Package | Description |
---|---|
org.biojava.nbio.structure.align.gui.aligpanel | |
org.biojava.nbio.structure.gui |
A few convenience classes to view protein structures with Jmol (if it is on the classpath),
to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
|
org.biojava.nbio.structure.gui.events |
Some event classes for the protein structure GUIs.
|
org.biojava.nbio.structure.gui.util |
Some utility classes for the protein structure GUIs.
|
Modifier and Type | Class and Description |
---|---|
class |
AligPanel
A JPanel that can display an AFPChain in a nice way and interact with Jmol.
|
class |
MultipleAligPanel
A JPanel that can display the sequence alignment of a
MultipleAlignment in a nice way and interact with Jmol by
selecting the aligned atoms of the sequence selection. |
class |
MultipleStatusDisplay
This class provides information of the selected positions in the
MultipleAligPanel . |
class |
StatusDisplay |
Modifier and Type | Method and Description |
---|---|
void |
AligPanel.addAlignmentPositionListener(AlignmentPositionListener li) |
void |
MultipleAligPanel.addAlignmentPositionListener(AlignmentPositionListener li) |
void |
AligPanelMouseMotionListener.addAligPosListener(AlignmentPositionListener li) |
void |
MultipleAligPanelMouseMotionListener.addAligPosListener(AlignmentPositionListener li) |
Modifier and Type | Method and Description |
---|---|
void |
SequenceDisplay.addAlignmentPositionListener(AlignmentPositionListener li) |
Modifier and Type | Class and Description |
---|---|
class |
JmolAlignedPositionListener |
Modifier and Type | Method and Description |
---|---|
void |
SequenceMouseListener.addAlignmentPositionListener(AlignmentPositionListener li) |
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