001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 */
021package demo;
022
023
024import org.biojava.nbio.structure.Structure;
025import org.biojava.nbio.structure.align.util.AtomCache;
026import org.biojava.nbio.structure.cath.CathDatabase;
027import org.biojava.nbio.structure.cath.CathDomain;
028import org.biojava.nbio.structure.cath.CathInstallation;
029
030/** An example for how to access CATH data.
031 *
032 * run with -Xmx512M
033 *
034 * @author Andreas Prlic
035 *
036 */
037public class DemoCATH {
038        public static void main(String[] args){
039
040                AtomCache cache  = new AtomCache();
041
042                CathDatabase database = new CathInstallation(cache.getPath());
043
044                String domainID = "1cdgA01";
045
046                CathDomain cathDomain = database.getDescriptionByCathId(domainID);
047
048                System.out.println(cathDomain);
049
050
051                Structure cathDomainStructure;
052                try {
053                        cathDomainStructure = cache.getStructure(domainID);
054                        System.out.println(cathDomainStructure);
055                } catch (Exception e) {
056                        // TODO Auto-generated catch block
057                        e.printStackTrace();
058                }
059
060
061
062
063        }
064}