001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 * Created on May 30, 2010 021 * Author: Jianjiong Gao 022 * 023 */ 024 025package org.biojava.nbio.protmod; 026 027import java.util.HashMap; 028import java.util.Map; 029 030/** 031 * 032 * @author Jianjiong Gao 033 * @since 3.0 034 */ 035public enum ModificationOccurrenceType { 036 NATURAL("natural"), 037 HYPOTHETICAL("hypothetical"), 038 ARTIFACTUAL("artifactual"); 039 040 ModificationOccurrenceType(String label) { 041 this.label = label; 042 } 043 044 /** 045 * 046 * @return the label of this ModificationOccurrenceType. 047 */ 048 public String label() { 049 return label; 050 } 051 052 /** 053 * @return the label of this ModificationOccurrenceType. 054 */ 055 @Override 056 public String toString() { 057 return label; 058 } 059 060 /** 061 * The variable is the same as the <Occurrence> in the ptm_list XML file. 062 */ 063 private String label; 064 065 /** 066 * 067 * @param label the label of ModificationOccurrenceType. 068 * @return the ModificationOccurrenceType that has the label. 069 */ 070 public static ModificationOccurrenceType getByLabel(String label) { 071 return mapLabelOcc.get(label); 072 } 073 074 private static Map<String, ModificationOccurrenceType> mapLabelOcc; 075 static { 076 mapLabelOcc = new HashMap<String, ModificationOccurrenceType>(); 077 for (ModificationOccurrenceType occ:ModificationOccurrenceType.values()) { 078 mapLabelOcc.put(occ.label, occ); 079 } 080 } 081}