001package org.biojava.nbio.structure.io.mmcif.model; 002 003/** 004 * A class containing the _atom_sites data. Equivalent to the SCALE records in PDB files. 005 * 006 * 007 * @author Jose Duarte 008 * 009 */ 010public class AtomSites extends AbstractBean { 011 012 String entry_id; 013 014 // to my knowledge this field is not used - JD 2016-11-22 015 String Cartn_transform_axes; 016 017 @CIFLabel(label="fract_transf_matrix[1][1]") 018 String fract_transf_matrix11; 019 020 @CIFLabel(label="fract_transf_matrix[1][2]") 021 String fract_transf_matrix12; 022 023 @CIFLabel(label="fract_transf_matrix[1][3]") 024 String fract_transf_matrix13; 025 026 027 @CIFLabel(label="fract_transf_matrix[2][1]") 028 String fract_transf_matrix21; 029 030 @CIFLabel(label="fract_transf_matrix[2][2]") 031 String fract_transf_matrix22; 032 033 @CIFLabel(label="fract_transf_matrix[2][3]") 034 String fract_transf_matrix23; 035 036 037 @CIFLabel(label="fract_transf_matrix[3][1]") 038 String fract_transf_matrix31; 039 040 @CIFLabel(label="fract_transf_matrix[3][2]") 041 String fract_transf_matrix32; 042 043 @CIFLabel(label="fract_transf_matrix[3][3]") 044 String fract_transf_matrix33; 045 046 047 @CIFLabel(label="fract_transf_vector[1]") 048 String fract_transf_vector1; 049 050 @CIFLabel(label="fract_transf_vector[2]") 051 String fract_transf_vector2; 052 053 @CIFLabel(label="fract_transf_vector[3]") 054 String fract_transf_vector3; 055 056 // these fields are unusual but appear in some entries like 5e5j - JD 2016-11-22 057 @CIFLabel(label="Cartn_transf_matrix[1][1]") 058 String Cartn_transf_matrix11; 059 060 @CIFLabel(label="Cartn_transf_matrix[1][2]") 061 String Cartn_transf_matrix12; 062 063 @CIFLabel(label="Cartn_transf_matrix[1][3]") 064 String Cartn_transf_matrix13; 065 066 @CIFLabel(label="Cartn_transf_matrix[2][1]") 067 String Cartn_transf_matrix21; 068 069 @CIFLabel(label="Cartn_transf_matrix[2][2]") 070 String Cartn_transf_matrix22; 071 072 @CIFLabel(label="Cartn_transf_matrix[2][3]") 073 String Cartn_transf_matrix23; 074 075 @CIFLabel(label="Cartn_transf_matrix[3][1]") 076 String Cartn_transf_matrix31; 077 078 @CIFLabel(label="Cartn_transf_matrix[3][2]") 079 String Cartn_transf_matrix32; 080 081 @CIFLabel(label="Cartn_transf_matrix[3][3]") 082 String Cartn_transf_matrix33; 083 084 @CIFLabel(label="Cartn_transf_vector[1]") 085 String Cartn_transf_vector1; 086 087 @CIFLabel(label="Cartn_transf_vector[2]") 088 String Cartn_transf_vector2; 089 090 @CIFLabel(label="Cartn_transf_vector[3]") 091 String Cartn_transf_vector3; 092 093 094 public String getEntry_id() { 095 return entry_id; 096 } 097 public void setEntry_id(String entry_id) { 098 this.entry_id = entry_id; 099 } 100 /** 101 * @return the cartn_transform_axes 102 */ 103 public String getCartn_transform_axes() { 104 return Cartn_transform_axes; 105 } 106 /** 107 * @param cartn_transform_axes the cartn_transform_axes to set 108 */ 109 public void setCartn_transform_axes(String cartn_transform_axes) { 110 Cartn_transform_axes = cartn_transform_axes; 111 } 112 /** 113 * @return the fract_transf_matrix11 114 */ 115 public String getFract_transf_matrix11() { 116 return fract_transf_matrix11; 117 } 118 /** 119 * @param fract_transf_matrix11 the fract_transf_matrix11 to set 120 */ 121 public void setFract_transf_matrix11(String fract_transf_matrix11) { 122 this.fract_transf_matrix11 = fract_transf_matrix11; 123 } 124 /** 125 * @return the fract_transf_matrix12 126 */ 127 public String getFract_transf_matrix12() { 128 return fract_transf_matrix12; 129 } 130 /** 131 * @param fract_transf_matrix12 the fract_transf_matrix12 to set 132 */ 133 public void setFract_transf_matrix12(String fract_transf_matrix12) { 134 this.fract_transf_matrix12 = fract_transf_matrix12; 135 } 136 /** 137 * @return the fract_transf_matrix13 138 */ 139 public String getFract_transf_matrix13() { 140 return fract_transf_matrix13; 141 } 142 /** 143 * @param fract_transf_matrix13 the fract_transf_matrix13 to set 144 */ 145 public void setFract_transf_matrix13(String fract_transf_matrix13) { 146 this.fract_transf_matrix13 = fract_transf_matrix13; 147 } 148 /** 149 * @return the fract_transf_matrix21 150 */ 151 public String getFract_transf_matrix21() { 152 return fract_transf_matrix21; 153 } 154 /** 155 * @param fract_transf_matrix21 the fract_transf_matrix21 to set 156 */ 157 public void setFract_transf_matrix21(String fract_transf_matrix21) { 158 this.fract_transf_matrix21 = fract_transf_matrix21; 159 } 160 /** 161 * @return the fract_transf_matrix22 162 */ 163 public String getFract_transf_matrix22() { 164 return fract_transf_matrix22; 165 } 166 /** 167 * @param fract_transf_matrix22 the fract_transf_matrix22 to set 168 */ 169 public void setFract_transf_matrix22(String fract_transf_matrix22) { 170 this.fract_transf_matrix22 = fract_transf_matrix22; 171 } 172 /** 173 * @return the fract_transf_matrix23 174 */ 175 public String getFract_transf_matrix23() { 176 return fract_transf_matrix23; 177 } 178 /** 179 * @param fract_transf_matrix23 the fract_transf_matrix23 to set 180 */ 181 public void setFract_transf_matrix23(String fract_transf_matrix23) { 182 this.fract_transf_matrix23 = fract_transf_matrix23; 183 } 184 /** 185 * @return the fract_transf_matrix31 186 */ 187 public String getFract_transf_matrix31() { 188 return fract_transf_matrix31; 189 } 190 /** 191 * @param fract_transf_matrix31 the fract_transf_matrix31 to set 192 */ 193 public void setFract_transf_matrix31(String fract_transf_matrix31) { 194 this.fract_transf_matrix31 = fract_transf_matrix31; 195 } 196 /** 197 * @return the fract_transf_matrix32 198 */ 199 public String getFract_transf_matrix32() { 200 return fract_transf_matrix32; 201 } 202 /** 203 * @param fract_transf_matrix32 the fract_transf_matrix32 to set 204 */ 205 public void setFract_transf_matrix32(String fract_transf_matrix32) { 206 this.fract_transf_matrix32 = fract_transf_matrix32; 207 } 208 /** 209 * @return the fract_transf_matrix33 210 */ 211 public String getFract_transf_matrix33() { 212 return fract_transf_matrix33; 213 } 214 /** 215 * @param fract_transf_matrix33 the fract_transf_matrix33 to set 216 */ 217 public void setFract_transf_matrix33(String fract_transf_matrix33) { 218 this.fract_transf_matrix33 = fract_transf_matrix33; 219 } 220 /** 221 * @return the fract_transf_vector1 222 */ 223 public String getFract_transf_vector1() { 224 return fract_transf_vector1; 225 } 226 /** 227 * @param fract_transf_vector1 the fract_transf_vector1 to set 228 */ 229 public void setFract_transf_vector1(String fract_transf_vector1) { 230 this.fract_transf_vector1 = fract_transf_vector1; 231 } 232 /** 233 * @return the fract_transf_vector2 234 */ 235 public String getFract_transf_vector2() { 236 return fract_transf_vector2; 237 } 238 /** 239 * @param fract_transf_vector2 the fract_transf_vector2 to set 240 */ 241 public void setFract_transf_vector2(String fract_transf_vector2) { 242 this.fract_transf_vector2 = fract_transf_vector2; 243 } 244 /** 245 * @return the fract_transf_vector3 246 */ 247 public String getFract_transf_vector3() { 248 return fract_transf_vector3; 249 } 250 /** 251 * @param fract_transf_vector3 the fract_transf_vector3 to set 252 */ 253 public void setFract_transf_vector3(String fract_transf_vector3) { 254 this.fract_transf_vector3 = fract_transf_vector3; 255 } 256 /** 257 * @return the cartn_transf_matrix11 258 */ 259 public String getCartn_transf_matrix11() { 260 return Cartn_transf_matrix11; 261 } 262 /** 263 * @param cartn_transf_matrix11 the cartn_transf_matrix11 to set 264 */ 265 public void setCartn_transf_matrix11(String cartn_transf_matrix11) { 266 Cartn_transf_matrix11 = cartn_transf_matrix11; 267 } 268 /** 269 * @return the cartn_transf_matrix12 270 */ 271 public String getCartn_transf_matrix12() { 272 return Cartn_transf_matrix12; 273 } 274 /** 275 * @param cartn_transf_matrix12 the cartn_transf_matrix12 to set 276 */ 277 public void setCartn_transf_matrix12(String cartn_transf_matrix12) { 278 Cartn_transf_matrix12 = cartn_transf_matrix12; 279 } 280 /** 281 * @return the cartn_transf_matrix13 282 */ 283 public String getCartn_transf_matrix13() { 284 return Cartn_transf_matrix13; 285 } 286 /** 287 * @param cartn_transf_matrix13 the cartn_transf_matrix13 to set 288 */ 289 public void setCartn_transf_matrix13(String cartn_transf_matrix13) { 290 Cartn_transf_matrix13 = cartn_transf_matrix13; 291 } 292 /** 293 * @return the cartn_transf_matrix21 294 */ 295 public String getCartn_transf_matrix21() { 296 return Cartn_transf_matrix21; 297 } 298 /** 299 * @param cartn_transf_matrix21 the cartn_transf_matrix21 to set 300 */ 301 public void setCartn_transf_matrix21(String cartn_transf_matrix21) { 302 Cartn_transf_matrix21 = cartn_transf_matrix21; 303 } 304 /** 305 * @return the cartn_transf_matrix22 306 */ 307 public String getCartn_transf_matrix22() { 308 return Cartn_transf_matrix22; 309 } 310 /** 311 * @param cartn_transf_matrix22 the cartn_transf_matrix22 to set 312 */ 313 public void setCartn_transf_matrix22(String cartn_transf_matrix22) { 314 Cartn_transf_matrix22 = cartn_transf_matrix22; 315 } 316 /** 317 * @return the cartn_transf_matrix23 318 */ 319 public String getCartn_transf_matrix23() { 320 return Cartn_transf_matrix23; 321 } 322 /** 323 * @param cartn_transf_matrix23 the cartn_transf_matrix23 to set 324 */ 325 public void setCartn_transf_matrix23(String cartn_transf_matrix23) { 326 Cartn_transf_matrix23 = cartn_transf_matrix23; 327 } 328 /** 329 * @return the cartn_transf_matrix31 330 */ 331 public String getCartn_transf_matrix31() { 332 return Cartn_transf_matrix31; 333 } 334 /** 335 * @param cartn_transf_matrix31 the cartn_transf_matrix31 to set 336 */ 337 public void setCartn_transf_matrix31(String cartn_transf_matrix31) { 338 Cartn_transf_matrix31 = cartn_transf_matrix31; 339 } 340 /** 341 * @return the cartn_transf_matrix32 342 */ 343 public String getCartn_transf_matrix32() { 344 return Cartn_transf_matrix32; 345 } 346 /** 347 * @param cartn_transf_matrix32 the cartn_transf_matrix32 to set 348 */ 349 public void setCartn_transf_matrix32(String cartn_transf_matrix32) { 350 Cartn_transf_matrix32 = cartn_transf_matrix32; 351 } 352 /** 353 * @return the cartn_transf_matrix33 354 */ 355 public String getCartn_transf_matrix33() { 356 return Cartn_transf_matrix33; 357 } 358 /** 359 * @param cartn_transf_matrix33 the cartn_transf_matrix33 to set 360 */ 361 public void setCartn_transf_matrix33(String cartn_transf_matrix33) { 362 Cartn_transf_matrix33 = cartn_transf_matrix33; 363 } 364 /** 365 * @return the cartn_transf_vector1 366 */ 367 public String getCartn_transf_vector1() { 368 return Cartn_transf_vector1; 369 } 370 /** 371 * @param cartn_transf_vector1 the cartn_transf_vector1 to set 372 */ 373 public void setCartn_transf_vector1(String cartn_transf_vector1) { 374 Cartn_transf_vector1 = cartn_transf_vector1; 375 } 376 /** 377 * @return the cartn_transf_vector2 378 */ 379 public String getCartn_transf_vector2() { 380 return Cartn_transf_vector2; 381 } 382 /** 383 * @param cartn_transf_vector2 the cartn_transf_vector2 to set 384 */ 385 public void setCartn_transf_vector2(String cartn_transf_vector2) { 386 Cartn_transf_vector2 = cartn_transf_vector2; 387 } 388 /** 389 * @return the cartn_transf_vector3 390 */ 391 public String getCartn_transf_vector3() { 392 return Cartn_transf_vector3; 393 } 394 /** 395 * @param cartn_transf_vector3 the cartn_transf_vector3 to set 396 */ 397 public void setCartn_transf_vector3(String cartn_transf_vector3) { 398 Cartn_transf_vector3 = cartn_transf_vector3; 399 } 400 401}