FatCatUserArgumentProcessor.FatCatStartupParams (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.align.ce.StartupParameters
- - org.biojava.nbio.structure.align.fatcat.FatCatUserArgumentProcessor.FatCatStartupParams

Enclosing class:: FatCatUserArgumentProcessor

protected class FatCatUserArgumentProcessor.FatCatStartupParams
extends StartupParameters

Constructor Summary

Constructors
Constructor Description

FatCatStartupParams()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`double`	`getDisCut()`
`int`	`getFragLen()`
`int`	`getMaxTra()`
`Double`	`getRmsdCut()`
`boolean`	`isFlexible()`
`void`	`setDisCut(double disCut)`
`void`	`setFlexible(boolean flexible)`
`void`	`setFragLen(int fragLen)`
`void`	`setMaxTra(int maxTra)`
`void`	`setRmsdCut(Double rmsdCut)`

Methods inherited from class org.biojava.nbio.structure.align.ce.StartupParameters
getAlignPairs, getCacheFilePath, getFile1, getFile2, getNrCPU, getOutFile, getPdb1, getPdb2, getPdbFilePath, getSaveOutputDir, getSearchFile, getShowDBresult, isAutoFetch, isDomainSplit, isOutputPDB, isPrintCE, isPrintFatCat, isPrintXML, isShow3d, isShowMenu, setAlignPairs, setAutoFetch, setCacheFilePath, setDomainSplit, setFile1, setFile2, setNrCPU, setOutFile, setOutputPDB, setPdb1, setPdb2, setPdbFilePath, setPrintCE, setPrintFatCat, setPrintXML, setSaveOutputDir, setSearchFile, setShow3d, setShowDBresult, setShowMenu, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail
- FatCatStartupParams
```
public FatCatStartupParams()
```

Method Detail

getFragLen
```
public int getFragLen()
```

setFragLen

public void setFragLen(int fragLen)

getRmsdCut
```
public Double getRmsdCut()
```

setRmsdCut

public void setRmsdCut(Double rmsdCut)

getDisCut
```
public double getDisCut()
```

setDisCut

public void setDisCut(double disCut)

getMaxTra
```
public int getMaxTra()
```

setMaxTra
```
public void setMaxTra(int maxTra)
```

isFlexible
```
public boolean isFlexible()
```

setFlexible

public void setFlexible(boolean flexible)