Archive for the ‘BioJava’ Category
Saturday, August 30th, 2003
Hi Everyone,
Apologies for the mass cross-posting but this email is about server and IP changes that will affect all of our projects and servers.
Simply put -- Wyeth, the company that provides us with our hosting and wonderful T3 connection to the internet is cutting their internet connection circuits over from ...
Posted in BioDAS, BioJava, BioMOBY, BioPerl, BioPython, General, OBDA / BioSQL | Comments Off
Sunday, July 27th, 2003
The "Biojava in Anger: A Tutorial and Recipe Book for Those in a Hurry" posted online at http://www.biojava.org/docs/bj_in_anger/index.htm has been translated into French and Japanese
Posted in BioJava | Comments Off
Friday, June 27th, 2003
BioneQ, the Quebec Bioinformatics Network, is organizing the first North
American BioJava Bootcamp from August 18th to 22nd. We have invited Matthew
Pocock to come to Montreal to present the material that has been presented
to the European Bootcamps for quite some time now. On the agenda
(preliminary):
-Sequence I/O and manipulations;
-BLAST and FASTA parsing;
-Using ...
Posted in BioJava | Comments Off
Wednesday, June 18th, 2003
Thomas Down writes:
After a long series of pre-releases (and many bug fixes), I've
just finished building BioJava 1.30. Source, binaries, and
javadocs can all be found at:
http://www.biojava.org/download/
As with the pre-releases, separate binaries are available for
java platform releases 1.3 and 1.4. The 1.4 releases include
some extra features which depend on jdk1.4 ...
Posted in BioJava | Comments Off
Tuesday, June 17th, 2003
Rhett Sutphin provides a mini-primer and some example code that shows how to view Chromatogram files with java.
His full posting can be read here:
http://pw600a.bioperl.org/pipermail/biojava-l/2003-June/003896.html
Posted in BioJava | Comments Off
Thursday, June 12th, 2003
Do you need to access sequences from multiple places? Would you like
to easily retrieve your own local sequences from indexed flat files,
all other sequences on species X from department wide raletional
database and the rest from global internet servers?
The Open Biological Database Access (OBDA) System was designed so that
one could use ...
Posted in BioJava, BioPerl, BioPython, OBDA / BioSQL | No Comments »
Thursday, June 5th, 2003
Mark writes:
The tutorial site BioJava in Anger has been updated so the code examples
reflect the new APIs in the upcomming BioJava 1.3 release. Take a peek
at http://bioconf.otago.ac.nz/biojava
Posted in BioJava | Comments Off
Wednesday, February 26th, 2003
Mark has updated his "Biojava in Anger" website to add three more tutorials. One on OrderNDistributions another on WeightMatrices and one on Profile HMMs.
The website URL is http://bioconf.otago.ac.nz/biojava/
Posted in BioJava | Comments Off
Monday, January 27th, 2003
Mark reports:
Just noticed a little snippit about biojava in the latest issue of the scientist http://www.the-scientist.com/yr2003/jan/labcon_030127.html (free registration required to view the article)
Posted in BioJava | Comments Off
Monday, January 13th, 2003
Thomas Down reports:
We've had a number of requests recently for a more recent snapshot of the biojava-live code, so I've just put together a biojava-1.3pre1 release. Get source, binaries, and javadocs from: http://www.biojava.org/download/
This isn't absolutely set in stone yet, but should give a reasonable indication of what the forthcoming ...
Posted in BioJava | Comments Off