Algorithm Java port

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Possible Java ports of Algorithms

We would be interested in having Java ports of the following algorithms:

- Blast
- Hmmer3
- Dssp (some parts already available)

Couple of tools that might be useful for porting to Java

This software is available for $119 with a 15 day return. It won't do perfect code but will get you close.

This is also an interesting approach where I can't imagine would work in a I/O or computationally intensive application. Converting ASM to Bytecode takes out all the parsing headaches. The JIT should still be able to take over and optimize.

I have used this before and works reasonably well. You get a Jar file that maps all the ansi C libraries.

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