Wiki Pages The following pages have been imported from the legacy mediawiki instance Algorithm Java port Amr AL-HOSSARY Andreas Dräger Andreas Prlic Annotations:List Autobuild events BOSC2008 Abstract BOSC2008 Presentation BOSC2009 Presentation BioJava3:Coding Conventions BioJava3 Design BioJava3 Eclipse with SVN BioJava3 Feature Requests BioJava3:HowTo BioJava3 NCBISequenceReader Design BioJava3 Proposal BioJava3 eclipse BioJava3 eclipse template BioJava3 license BioJava3 logging BioJava3 project BioJava;CookBook3:PSA DNA BioJavaKorean:GetStarted BioJava:1.5ReleasePlan BioJava 3 Use Cases BioJava:About BioJava:BioJavaInside BioJava:BioJavaXDocs BioJava:CambridgeDiscussion BioJava:Community Portal BioJava:CooBook3:HmmerService BioJava:CookBook BioJava:CookBook1.7 BioJava:CookBook3.0 BioJava:CookBook3:AddProtMod BioJava:CookBook3:FASTQ BioJava:CookBook3:HmmerService BioJava:CookBook3:MSA BioJava:CookBook3:MSAProfiler BioJava:CookBook3:ModFinder BioJava:CookBook3:NCBIQBlastService BioJava:CookBook3:PSA BioJava:CookBook3:PSA DNA BioJava:CookBook3:ParsingBlastXMLOutput BioJava:CookBook3:ProtMod BioJava:CookBook3:ProteinDisorder BioJava:CookBook3:ProteinDisorderCLI BioJava:CookBook3:Stockholm BioJava:CookBook3:SupportedProtMod BioJava:CookBook4.0 BioJava:CookBookItaliano BioJava:CookBookItaliano:Alphabets BioJava:CookBookItaliano:Alphabets:Ambiguous BioJava:CookBookItaliano:Alphabets:Canonical BioJava:CookBookItaliano:Alphabets:Component BioJava:CookBookItaliano:Alphabets:CrossProduct BioJava:CookBookItaliano:Alphabets:Custom BioJava:CookBookItaliano:Annotations:List BioJava:CookBookItaliano:GetStarted BioJava:CookBookItaliano:Proteomics BioJava:CookBookItaliano:Proteomics:AAindex BioJava:CookBookItaliano:SeqIO:GBtoFasta BioJava:CookBookItaliano:SeqIO:ReadFasta BioJava:CookBookItaliano:SeqIO:ReadGES BioJava:CookBookItaliano:SeqIO:WriteInFasta BioJava:CookBookItaliano:Sequence BioJava:CookBookItaliano:Sequence:ChangeName BioJava:CookBookItaliano:Sequence:Edit BioJava:CookBookItaliano:Sequence:ExtractGeneRegions BioJava:CookBookItaliano:Sequence:Regex BioJava:CookBookItaliano:Sequence:Reverse BioJava:CookBookItaliano:Sequence:SubSequence BioJava:CookBookItaliano:Sequence:Transcribe BioJava:CookBookItaliano:Translation BioJava:CookBookItaliano:Translation:NonStandart BioJava:CookBookItaliano:Translation:OneLetterAmbi BioJava:CookBookItaliano:Translation:Single BioJava:CookBookItaliano:Translation:SixFrames BioJava:CookBookLegacy BioJava:CookBook:AAPROP:AdvancedAminoAcidComposition.xml BioJava:CookBook:AAPROP:AdvancedElementMass.xml BioJava:CookBook:AAPROP:AminoAcidComposition.xml BioJava:CookBook:AAPROP:ElementMass.xml BioJava:CookBook:AAPROP:MinAminoAcidComposition.xml BioJava:CookBook:AAPROP:MinElementMass.xml BioJava:CookBook:AAPROP:absorbanceandextinctioncoefficient BioJava:CookBook:AAPROP:aliphaticindex BioJava:CookBook:AAPROP:apliphaticindex BioJava:CookBook:AAPROP:averagehydropathyvalue BioJava:CookBook:AAPROP:commandprompt BioJava:CookBook:AAPROP:instabilityindex BioJava:CookBook:AAPROP:isoelectricpoint BioJava:CookBook:AAPROP:main BioJava:CookBook:AAPROP:molecularweight BioJava:CookBook:AAPROP:netcharge BioJava:CookBook:AAPROP:profeat BioJava:CookBook:AAPROP:xmlfiles BioJava:CookBook:BioSQL:Manage BioJava:CookBook:BioSQL:SetupOracle BioJava:CookBook:BioSQL:SetupPostGre BioJava:CookBook:Blast:Echo BioJava:CookBook:Blast:Extract BioJava:CookBook:Blast:Parser BioJava:CookBook:Blast:XML BioJava:CookBook:Cloud:ec2 BioJava:CookBook:Core:FastaReadWrite BioJava:CookBook:Core:GenbankRead BioJava:CookBook:Core:Overview BioJava:CookBook:Core:SequenceCompare BioJava:CookBook:Core:SequenceFeaturePanel BioJava:CookBook:Core:Sequences BioJava:CookBook:Count:Frequency BioJava:CookBook:Count:Residues BioJava:CookBook:Count:ToDistrib BioJava:CookBook:DP:HMM BioJava:CookBook:DP:PairWise BioJava:CookBook:DP:PairWise2 BioJava:CookBook:DP:WeightMatrix BioJava:CookBook:Distribution:Bayes BioJava:CookBook:Distribution:Composition BioJava:CookBook:Distribution:Custom BioJava:CookBook:Distribution:Emission BioJava:CookBook:Distribution:Entropy BioJava:CookBook:Distribution:Gibbs BioJava:CookBook:Distribution:RandomSeqs BioJava:CookBook:Distribution:XML BioJava:CookBook:ExternalSources:NCBIFetch BioJava:CookBook:Fasta:Parser BioJava:CookBook:GA BioJava:CookBook:Interfaces:Alignments BioJava:CookBook:Interfaces:Alignments II BioJava:CookBook:Interfaces:Coordinates BioJava:CookBook:Interfaces:Features BioJava:CookBook:Interfaces:ProteinPeptideFeatures BioJava:CookBook:Interfaces:ViewAsTree BioJava:CookBook:Interfaces:ViewInGUI BioJava:CookBook:Interfaces:ViewInGUI2 BioJava:CookBook:MSA BioJava:CookBook:OBO:parse BioJava:CookBook:OBO:visualize BioJava:CookBook:PDBP:BerkeleySCOP BioJava:CookBook:PDB:BioJava Algorithm BioJava:CookBook:PDB:CE Algorithm BioJava:CookBook:PDB:FATCAT Algorithm BioJava:CookBook:PDB:Jmol BioJava:CookBook:PDB:SCOP BioJava:CookBook:PDB:aboutalign BioJava:CookBook:PDB:align BioJava:CookBook:PDB:alignGUI BioJava:CookBook:PDB:atoms BioJava:CookBook:PDB:atomsCalc BioJava:CookBook:PDB:bioassembly BioJava:CookBook:PDB:datamodel BioJava:CookBook:PDB:groups BioJava:CookBook:PDB:header BioJava:CookBook:PDB:hibernate BioJava:CookBook:PDB:ligands BioJava:CookBook:PDB:mmcif BioJava:CookBook:PDB:mutate BioJava:CookBook:PDB:read BioJava:CookBook:PDB:read3.0 BioJava:CookBook:PDB:residuerange BioJava:CookBook:PDB:restful BioJava:CookBook:PDB:seqres BioJava:CookBook:PSA BioJava:CookBook:Phylo:Overview BioJava:CookBook:Phylo:ProfileToMSA BioJava:CookBook:Services:Qblast BioJava:CookBook:genome:Overview BioJava:CookBool:PDB:mmcif BioJava:CookbookFR BioJava:CookbookFrench BioJava:CookbookFrenchAlphabets BioJava:CookbookFrench:Alphabets BioJava:CookbookFrench:Alphabets:Ambiguity BioJava:CookbookFrench:Alphabets:Canonical BioJava:CookbookFrench:Alphabets:Component BioJava:CookbookFrench:Alphabets:CrossProduct BioJava:CookbookFrench:Alphabets:CustomAlphabets BioJava:CookbookFrench:Annotations:Filter BioJava:CookbookFrench:Annotations:List BioJava:CookbookFrench:BioSQL:Manage BioJava:CookbookFrench:Blast:Echo BioJava:CookbookFrench:Blast:Extract BioJava:CookbookFrench:Blast:Parser BioJava:CookbookFrench:Count:Frequency BioJava:CookbookFrench:Count:Residues BioJava:CookbookFrench:Count:ToDistrib BioJava:CookbookFrench:DP:HMM BioJava:CookbookFrench:DP:PairWise BioJava:CookbookFrench:DP:PairWise2 BioJava:CookbookFrench:DP:WeightMatrix BioJava:CookbookFrench:Distirbution:Custom BioJava:CookbookFrench:Distirbution:Emission BioJava:CookbookFrench:Distirbution:Entropy BioJava:CookbookFrench:Distribution:Bayes BioJava:CookbookFrench:Distribution:Composition BioJava:CookbookFrench:Distribution:Custom BioJava:CookbookFrench:Distribution:Gibbs BioJava:CookbookFrench:Distribution:RandomSeqs BioJava:CookbookFrench:Distribution:XML BioJava:CookbookFrench:ExternalSources:NCBIFetch BioJava:CookbookFrench:Fasta:Parser BioJava:CookbookFrench:GA BioJava:CookbookFrench:Interfaces:Coordinates BioJava:CookbookFrench:Interfaces:Features BioJava:CookbookFrench:Interfaces:ProteinPeptideFeatures BioJava:CookbookFrench:Interfaces:ViewAsTree BioJava:CookbookFrench:Interfaces:ViewInGUI BioJava:CookbookFrench:Locations:Circular BioJava:CookbookFrench:Locations:Feature BioJava:CookbookFrench:Locations:Filter BioJava:CookbookFrench:Locations:Point BioJava:CookbookFrench:Locations:Range BioJava:CookbookFrench:Locations:Remove BioJava:CookbookFrench:Ontology:OBO BioJava:CookbookFrench:PDB:Align BioJava:CookbookFrench:PDB:Atom BioJava:CookbookFrench:PDB:AtomCalc BioJava:CookbookFrench:PDB:Group BioJava:CookbookFrench:PDB:Header BioJava:CookbookFrench:PDB:Jmol BioJava:CookbookFrench:PDB:Mmcif BioJava:CookbookFrench:PDB:Mutate BioJava:CookbookFrench:PDB:Read BioJava:CookbookFrench:PDB:Seqres BioJava:CookbookFrench:Proteomics BioJava:CookbookFrench:Proteomics:AAindex BioJava:CookbookFrench:SeqIO:ABItoSequence BioJava:CookbookFrench:SeqIO:Echo BioJava:CookbookFrench:SeqIO:GBToFasta BioJava:CookbookFrench:SeqIO:ReadFasta BioJava:CookbookFrench:SeqIO:ReadGES BioJava:CookbookFrench:SeqIO:ReadGESBiojavax BioJava:CookbookFrench:SeqIO:WriteInFasta BioJava:CookbookFrench:Sequence BioJava:CookbookFrench:Sequence:ChangeName BioJava:CookbookFrench:Sequence:Edit BioJava:CookbookFrench:Sequence:Regex BioJava:CookbookFrench:Sequence:Reverse BioJava:CookbookFrench:Sequence:SubSequence BioJava:CookbookFrench:Sequence:Transcribe BioJava:CookbookFrench:Services:Qblast BioJava:CookbookFrench:Translation BioJava:CookbookFrench:Translation:NonStandard BioJava:CookbookFrench:Translation:OneLetterAmbi BioJava:CookbookFrench:Translation:Single BioJava:CookbookFrench:Translation:SixFrame BioJava:CookbookKorean BioJava:CookbookPortuguese BioJava:CookbookPortuguese:Alphabets BioJava:CookbookPortuguese:Alphabets:CrossProduct BioJava:CookbookPortuguese:Alphabets:Custom BioJava:CookbookPortuguese:Blast:Parser BioJava:CookbookPortuguese:Count:Frequency BioJava:CookbookPortuguese:Count:Residues BioJava:CookbookPortuguese:Interfaces:ViewAsTree BioJava:CookbookPortuguese:PDB:mutate BioJava:CookbookPortuguese:PDB:read BioJava:CookbookPortuguese:Proteomics BioJava:CookbookPortuguese:SeqIO:WriteInFasta BioJava:CookbookPortuguese:Sequence BioJava:CookbookPortuguese:Translation BioJava:Cookbook:Alphabets BioJava:Cookbook:Alphabets:Ambiguous BioJava:Cookbook:Alphabets:Component BioJava:Cookbook:Alphabets:Cononical BioJava:Cookbook:Alphabets:CrossProduct BioJava:Cookbook:Alphabets:Custom BioJava:Cookbook:Annotations:Filter BioJava:Cookbook:Annotations:List BioJava:Cookbook:Annotations:List2 BioJava:Cookbook:Locations:Circular BioJava:Cookbook:Locations:Feature BioJava:Cookbook:Locations:Filter BioJava:Cookbook:Locations:Point BioJava:Cookbook:Locations:Range BioJava:Cookbook:Locations:Remove BioJava:Cookbook:Proteomics BioJava:Cookbook:Proteomics:AAindex BioJava:Cookbook:SeqIO:ABItoSequence BioJava:Cookbook:SeqIO:Echo BioJava:Cookbook:SeqIO:FASTQ BioJava:Cookbook:SeqIO:GBtoFasta BioJava:Cookbook:SeqIO:ReadFasta BioJava:Cookbook:SeqIO:ReadGES BioJava:Cookbook:SeqIO:ReadGESBiojavax BioJava:Cookbook:SeqIO:WriteInFasta BioJava:Cookbook:Sequence BioJava:Cookbook:Sequence:ChangeName BioJava:Cookbook:Sequence:Edit BioJava:Cookbook:Sequence:ExtractGeneRegions BioJava:Cookbook:Sequence:Regex BioJava:Cookbook:Sequence:Reverse BioJava:Cookbook:Sequence:SubSequence BioJava:Cookbook:Sequence:Transcribe BioJava:Cookbook:Translation BioJava:Cookbook:Translation:NonStandart BioJava:Cookbook:Translation:OneLetterAmbi BioJava:Cookbook:Translation:Single BioJava:Cookbook:Translation:SixFrames BioJava:Current events BioJava:Download BioJava:Download 1.3 BioJava:Download 1.4 BioJava:Download 1.5 BioJava:Download 1.6 BioJava:Download 1.7.1 BioJava:Download 1.7 BioJava:Download 1.8.1 BioJava:Download 1.8.2 BioJava:Download 1.8.4 BioJava:Download 1.8.5 BioJava:Download 1.8 BioJava:Download 1.9.0 BioJava:Download 1.9.1 BioJava:Download 3.0.1 BioJava:Download 3.0.2 BioJava:Download 3.0.3 BioJava:Download 3.0.4 BioJava:Download 3.0.5 BioJava:Download 3.0.6 BioJava:Download 3.0.7 BioJava:Download 3.0.8 BioJava:Download 3.0 BioJava:Download 3.1.0 BioJava:Download 4.0.0 BioJava:Download 4.1.0 BioJava:Download 4.2.0 BioJava:EnsureCopyrightHeader BioJava:Forum BioJava:GetStarted BioJava:GetStartedLegacy BioJava:Hackathon2010 BioJava:Hackaton2010 BioJava:Hackers Guide BioJava:License BioJava:Logo BioJava:MailingLists BioJava:Make release BioJava:MavenMigration BioJava:Modules BioJava:My build biojava BioJava:Performance BioJava:Performance:AlignMyoHemo BioJava:Performance:AlignSW BioJava:Performance:ReadDrosophila BioJava:Performance:ReverseComplement BioJava:PhyloSOC07 BioJava:PhyloSOC07 doc BioJava:Site support BioJava:SocialNetworking BioJava:ToDo BioJava:Tutorial BioJava:Tutorial:Blast-like Parsing Cook Book BioJava:Tutorial:Blast2HTML BioJava:Tutorial:Blast2HTML Example Application BioJava:Tutorial:ChangeEvent example using Distribution objects BioJava:Tutorial:ChangeEvent overview BioJava:Tutorial:Changeability, Mutability and Events BioJava:Tutorial:Changeability examples BioJava:Tutorial:Dynamic programming examples BioJava:Tutorial:Implementing Changeable BioJava:Tutorial:Installing BioSQL BioJava:Tutorial:Installing and using BioSQL BioJava:Tutorial:MultiAlignClustalW BioJava:Tutorial:Sequence IO basics BioJava:Tutorial:Sequences and Features BioJava:Tutorial:Simple HMMs with BioJava BioJava:Tutorial:Symbols and SymbolLists BioJava talk:About BioJava talk:BioJavaXDocs BioJava talk:CookBook BioJava talk:CookBook1.7 BioJava talk:CookBook3:NCBIQBlastService BioJava talk:CookBook3:PSA DNA BioJava talk:CookBook:Blast:Parser BioJava talk:CookBook:Blast:XML BioJava talk:CookBook:Interfaces:ViewInGUI2 BioJava talk:CookBook:PDB:ligands BioJava talk:CookBook:PDB:mutate BioJava talk:CookbookPortuguese BioJava talk:Cookbook:SeqIO:ReadGES BioJava talk:Cookbook:Sequence:ExtractGeneRegions BioJava talk:Forum BioJava talk:MailingLists BioJava talk:ToDo BioJava talk:Tutorial:Blast-like Parsing Cook Book BioJava talk:Tutorial:Installing and using BioSQL BioJava talk:Tutorial:Simple HMMs with BioJava BioJava talk:Tutorial:Symbols and SymbolLists BioLit BiojavaKorean:Cookbook:Alphabets BiojavaKorean:Cookbook:Alphabets:Custom CE-CP CECP CVS to SVN Migration Category:People Category:Tutorial Chuan Hock Koh Coding exercise Combinatorial Extension with Circular Permutations Core Team Current events Czar David Huen Dazzle DazzleQuickStartGuide Dazzle:Ensembl Dazzle:deployment Dazzle:deployment google app engine Dazzle:eclipse Dazzle:examplePlugin Dazzle:plugins Dazzle:writeplugin Developer Code Access Dickson Guedes Dickson S. Guedes File talk:Biojava logo.gif Francois Pepin GSoC:AAPropertiesComputation GSoC:MSA GSoC:MSA Design GSoC:PTM Get source Git workflow Google Summer of Code Google Summer of Code 2010 Google Summer of Code 2011 Google Summer of Code 2012 Google Summer of Code 2013 Google Summer of Code 2014 Help talk:Contents How are Physico-Chemical Properties Computed? How to integrate BioJava in NetBeans IDE Jianjiong Gao Keith James MBTOpen:About MSA skype 20100608 MSA skype 20100615 MSA skype 20100622 MSA skype 20100629 MSA skype 20100721 MSA skype 20100727 MSA skype 20100810 MSA skype 20100817 Main Page Maintainers wanted Mark Chapman Mark Schreiber Martin Szugat Matthew Pocock MediaWiki talk:Sidebar Michael Heuer RCSB Viewers:About RCSB Viewers:Architectural Overview RCSB Viewers:Developer Environment RCSB Viewers:MBT Libs:Bonds and Nucleic Acid Identification^Classification RCSB Viewers:MBT Libs:Fragment (Secondary Structure) Definition RCSB Viewers:MBT Libs:PDBToNdbConverter RCSB Viewers:Projects Overview RCSB Viewers:Source Division RCSB Viewers:Viewer Framework:General Rendering RCSB Viewers:Viewer Framework:Picking Richard Holland SVN to GIT Migration SVNmigrationHistory Sandbox Scala Short coding exercise Sitesupport-url Sylvain Foisy Test.fasta Test Jmol with PDB file Test Jmol with XYZ file Thomas Down To know folllow this link Tutorial:Footer UsageAnalysis User talk:Ammad User talk:Biki proteomics User talk:Eye glasses User talk:Foisys User talk:HomeWork Solver User talk:John Ting User talk:Johnwall7144 User talk:Lily Joey User talk:Mauricio User talk:S Khadar User talk:Seeker User talk:Sibel Karabulut User talk:Suji User talk:Sulaman User talk:Wy666 User talk:Yasset.perez
