BioJava:Download 4.1.0

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This page offers downloads for the BioJava 4.1.0 release.

BioJava 4.1.0 is compatible with Java 6, 7, and 8.

Contents

About

BioJava 4.1.0 has been released and is available using Maven from Maven Central as well as manual download (see below).

This release contains over 240 commits from 8 contributors.

New Features

BioJava 4.1.0 offers a few new features, as well several bug-fixes.

New Features:

  • New algorithm for multiple structure alignments
  • Improved visualization of structural alignments in Jmol
  • Support for the ECOD protein classification
  • Better mmCIF support: limited write support, better parsing

View the BioJava:Modules page for a list of current modules.

Maven Download

BioJava 4.1.0 requires Maven for the build process. All BioJava jar files are available via Maven Central as of this release.

You can create a BioJava dependency by adding the following XML to your project pom.xml file:

        <dependencies>
                <dependency>
                        <groupId>org.biojava</groupId>
                        <artifactId>biojava-core</artifactId>
                        <version>4.1.0</version>
                </dependency>
                <!-- other biojava jars as needed -->
        </dependencies>	

Manual Download

.tar.gz containing all jars, source and javadocs: biojava-4.1.0-all

Module Binary Jar Source Jar Javadoc Jar
biojava-core biojava-core-4.1.0.jar biojava-core-4.1.0-sources.jar biojava-core-4.1.0-javadoc.jar
biojava-alignment biojava-alignment-4.1.0.jar biojava-alignment-4.1.0-sources.jar biojava-alignment-4.1.0-javadoc.jar
biojava-genome biojava-genome-4.1.0.jar biojava-genome-4.1.0-sources.jar biojava-genome-4.1.0-javadoc.jar
biojava-structure biojava-structure-4.1.0.jar biojava-structure-4.1.0-sources.jar biojava-structure-4.1.0-javadoc.jar
biojava-structure-gui biojava-structure-gui-4.1.0.jar biojava-structure-gui-4.1.0-sources.jar biojava-structure-gui-4.1.0-javadoc.jar
biojava-phylo biojava-phylo-4.1.0.jar biojava-phylo-4.1.0-sources.jar biojava-phylo-4.1.0-javadoc.jar
biojava-modfinder biojava-modfinder-4.1.0.jar biojava-modfinder-4.1.0-sources.jar biojava-modfinder-4.1.0-javadoc.jar
biojava-ws biojava-ws-4.1.0.jar biojava-ws-4.1.0-sources.jar biojava-ws-4.1.0-javadoc.jar
biojava-aa-prop biojava-aa-prop-4.1.0.jar biojava-aa-prop-4.1.0-sources.jar biojava-aa-prop-4.1.0-javadoc.jar
biojava-ontology biojava-ontology-4.1.0.jar biojava-ontology-4.1.0-sources.jar biojava-ontology-4.1.0-javadoc.jar
biojava-survival biojava-survival-4.1.0.jar biojava-survival-4.1.0-sources.jar biojava-survival-4.1.0-javadoc.jar
biojava-protein-disorder biojava-protein-disorder-4.1.0.jar biojava-protein-disorder-4.1.0-sources.jar biojava-protein-disorder-4.1.0-javadoc.jar

Browse API docs

You can also browse the documentation at BioJava 4.1.0 api

Release Date

BioJava 4.1.0 has been released on June 25th, 2015

Getting older versions

  • The release of 4.0.0 can be found here (requires Java 1.6, 1.7, or 1.8)
  • The release of 3.1.0 can be found here (requires Java 1.6 or 1.7)
  • The release of 3.0.8 can be found here (requires Java 1.6+)
  • The release of 3.0.7 can be found here (requires Java 1.6+)
  • The release of 3.0.6 can be found here (requires Java 1.6+)
  • The release of 3.0.5 can be found here (requires Java 1.6+)
  • The release of 3.0.4 can be found here (requires Java 1.6+)
  • The release of 3.0.3 can be found here (requires Java 1.6+)
  • The release of 3.0.2 can be found here (requires Java 1.6+)
  • The release of 3.0.1 can be found here (requires Java 1.6+)
  • The release of 3.0 can be found here (requires Java 1.5+)
  • The legacy release of 1.9.1 can be found here (requires Java 1.5+)
  • The legacy release of 1.9.0 can be found here (requires Java 1.5+)
  • The legacy release of 1.8.5 can be found here (requires Java 1.5+)
  • The legacy release of 1.8.4 can be found here (requires Java 1.5+)
  • The legacy release of 1.8.2 can be found here (requires Java 1.5+)
  • The legacy release of 1.8.1 can be found here (requires Java 1.5+)
  • The legacy release of 1.7.1 can be found here (requires Java 1.5+)
  • The legacy release of 1.7 can be found here (requires Java 1.5+)
  • The legacy release of 1.6 can be found here (requires Java 1.5+)
  • The legacy release of 1.5 can be found here (requires Java 1.4.2+)
  • The legacy release of 1.4 can be found here
  • The legacy release 1.3 can be found here.
  • Older releases of BioJava can be found in the download area.
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