BioJava:MavenMigration
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BioJava Maven migration and modularization
Progress
The new modularized code has been moved to the biojava-live/trunk
More feedback is welcome.
[INFO] ------------------------------------------------------------------------ [INFO] biojava ............................................... SUCCESS [1.543s] [INFO] core .................................................. SUCCESS [16.352s] [INFO] alignment ............................................. SUCCESS [4.123s] [INFO] blast ................................................. SUCCESS [29.427s] [INFO] structure ............................................. SUCCESS [22.653s] [INFO] das ................................................... SUCCESS [27.339s] [INFO] biojava ............................................... SUCCESS [0.174s] [INFO] sequence-core ......................................... SUCCESS [1.161s] [INFO] sequence-dna .......................................... SUCCESS [0.778s] [INFO] sequence-rna .......................................... SUCCESS [0.701s] [INFO] sequence-biosql ....................................... SUCCESS [0.661s] [INFO] sequence-fasta ........................................ SUCCESS [0.739s] [INFO] sequence-blastxml ..................................... SUCCESS [0.362s] [INFO] sequencing ............................................ SUCCESS [1.840s] [INFO] phylo ................................................. SUCCESS [1.889s] [INFO] biosql ................................................ SUCCESS [1.997s] [INFO] gui ................................................... SUCCESS [1.923s] [INFO] ------------------------------------------------------------------------
TODO List
The following things still need to be done:
- find solution for what to do with docs (move to relevant module or wiki) - add 'svn:ignore target' properties to all the module top-level folders - signing: re-enable the digital signature for jars - update cruisecontrol to use maven instead of ant - figure out the easiest way to install sequence-blastxml on netbeans (resolve jaxb dependcy problem)
Procedure
- declare code freeze (done, code freeze is over now)
- I will refactor the code into the modules and commit the new version at a new location in the SVN. (done)
- Documentation will be updated to reflect the new organization (in the process)
- All developers should obtain a new checkout
- We need to identify leaders for the development of the sub-modules. View the current list of defined modules
- Continue development on the new modules
- Finalize the new version of BioJava at the upcoming Hackaton
- release!
--Andreas 03:08, 24 August 2009 (UTC)
