• About BioJava
• Get started with BioJava.
• Download the latest BioJava release.
• Get started with BioJava Legacy 1.8.
• Download BioJava Legacy 1.8.
• Contact us on BioJava Mailing Lists

BioJava 3.0.2

• View simple examples for how to work with BioJava at BioJava:CookBook.
• Access the documentation for all classes and methods at Javadoc API (v3.0.2)
• Read some examples of how to use the new BioJava3 code.
• Coding conventions for BioJava3

Legacy BioJava 1.8

• Access the documentation for all classes and methods at Javadoc API (v1.8)
• A few tutorials are at BioJava:Tutorial
• Documentation for the BioJavaX classes: BioJava:BioJavaXDocs

Others

• Dazzle - a Java DAS server library based on BioJava.
• Java Web Start examples of the BioJava:Performance

BioJava 3.0

• BioJava:CookBook - view all cookbook pages
• Core
• Alignment
• Protein Structure

Legacy BioJava 1.8.1

• Legacy CookBook - view all cookbook pages
• Alphabets and Symbols
• Basic Sequence Manipulation
• Translation
• Proteomics
• Sequence IO
• Annotations
• Locations and Features
• BLAST and FASTA
• Counts and Distributions
• Weight Matrices and Dynamic Programming
• User interfaces
• BioSQL and Sequence Databases
• Genetic Algorithms
• Ontologies

• Contact us at the mailing lists. Ask for help, provide feedback here.
• How to support BioJava.
• We are looking for Maintainers for some of the modules.
• Recent changes in this wiki.
• Who contributed to BioJava?
• BioJava forum
• BioJava groups on social networking sites

• Browse through the BioJava subversion (SVN) repository.
• Browse BioJava Maven repository.
• About the BioJava license
• How to obtain a SVN checkout of BioJava.
• biojava-dev - the mailing list for developers.
• View open bugs or known issues (old database).
• Submit a new bug or request for enhancement.
• CruiseControl - BioJava automated builds are available from here. (see current status)
• Ohloh - The BioJava project metrics at Ohloh.

• View a list of applications using BioJava.
• More than 50 scientific publications reference BioJava.
• Dazzle - a DAS server library that is based on BioJava.

The open-bio servers reside in in a Tier 1 Boston area colocation facility. Infrastructure geeks can see pictures of the colocation cage and the new OBF servers online at this URL: [1] -- those servers also host EMBOSS FTP/CVS and mailing lists.

We would like to thank Chris Dagdigian from The Bioteam for providing and maintaining the bio* servers.

Please see documentation on customizing the interface and the User's Guide for usage and configuration help.