Class SimpleGapPenalty

    • Constructor Detail

      • SimpleGapPenalty

        public SimpleGapPenalty()
        Creates a new set of gap penalties using the defaults.
      • SimpleGapPenalty

        public SimpleGapPenalty​(int gop,
                                int gep)
        Creates a new set of gap penalties.
        Parameters:
        gop - the gap open penalty; should be nonnegative
        gep - the gap extension penalty; should be nonnegative