Uses of Class
org.biojava.nbio.alignment.Alignments.PairwiseSequenceScorerType
-
Packages that use Alignments.PairwiseSequenceScorerType Package Description org.biojava.nbio.alignment -
-
Uses of Alignments.PairwiseSequenceScorerType in org.biojava.nbio.alignment
Methods in org.biojava.nbio.alignment that return Alignments.PairwiseSequenceScorerType Modifier and Type Method Description static Alignments.PairwiseSequenceScorerType
Alignments.PairwiseSequenceScorerType. valueOf(String name)
Returns the enum constant of this type with the specified name.static Alignments.PairwiseSequenceScorerType[]
Alignments.PairwiseSequenceScorerType. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in org.biojava.nbio.alignment with parameters of type Alignments.PairwiseSequenceScorerType Modifier and Type Method Description static <S extends Sequence<C>,C extends Compound>
List<PairwiseSequenceScorer<S,C>>Alignments. getAllPairsScorers(List<S> sequences, Alignments.PairwiseSequenceScorerType type, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix)
static <S extends Sequence<C>,C extends Compound>
double[]Alignments. getAllPairsScores(List<S> sequences, Alignments.PairwiseSequenceScorerType type, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix)
-