Uses of Class org.biojava.nbio.alignment.routines.AlignerHelper.Anchor (biojava 7.1.4 API)

Packages that use AlignerHelper.Anchor

Package

Description

org.biojava.nbio.alignment.routines

org.biojava.nbio.alignment.template

Uses of AlignerHelper.Anchor in org.biojava.nbio.alignment.routines

Methods in org.biojava.nbio.alignment.routines with parameters of type AlignerHelper.Anchor

Modifier and Type

Method

Description

int

AlignerHelper.Anchor.QueryIndexComparator.compare(AlignerHelper.Anchor o1, AlignerHelper.Anchor o2)

Method parameters in org.biojava.nbio.alignment.routines with type arguments of type AlignerHelper.Anchor

Modifier and Type

Method

Description

static List<AlignerHelper.Subproblem>

AlignerHelper.Subproblem.getSubproblems(List<AlignerHelper.Anchor> anchors, int querySequenceLength, int targetSequenceLength)

Convert a list of anchors into a subproblem list.
Uses of AlignerHelper.Anchor in org.biojava.nbio.alignment.template

Fields in org.biojava.nbio.alignment.template with type parameters of type AlignerHelper.Anchor

Modifier and Type

Field

Description

protected List<AlignerHelper.Anchor>

AbstractMatrixAligner.anchors