Package org.biojava.nbio.core.alignment.matrices

Interface AAIndexProvider

All Known Implementing Classes:

DefaultAAIndexProvider

public interface AAIndexProvider

Method Summary

Modifier and Type	Method	Description
SubstitutionMatrix<AminoAcidCompound>	getMatrix(String matrixName)	Gets a substitution matrix by its name.

Method Details

getMatrix

SubstitutionMatrix<AminoAcidCompound> getMatrix(String matrixName)

Gets a substitution matrix by its name. The matrices are defined in src/main/resources/matrices/AAINDEX.txt

Parameters:

matrixName -

Returns:

The @{code}SubstitutionMatrix or null if not exists