Package org.biojava.nbio.core.sequence.features

Class DBReferenceInfo

java.lang.Object

org.biojava.nbio.core.sequence.features.Qualifier

org.biojava.nbio.core.sequence.features.DBReferenceInfo

Direct Known Subclasses:

FeatureDbReferenceInfo

public class DBReferenceInfo
extends Qualifier

If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by. This is a place holder for the alternative source database and the id for the same protein. Currently implement when the UniprotProxySequenceReader is used to load a protein sequence

Author:

Scooter Willis , Paolo Pavan

Constructor Summary

Constructors

Constructor	Description
DBReferenceInfo(String database, String id)	The source database and id

Method Summary

Modifier and Type	Method	Description
void	addProperty(String type, String value)	Add a property and type to associate with this DBReferenceInfo
String	getDatabase()
String	getId()
LinkedHashMap<String,String>	getProperties()	Get the properties
void	setDatabase(String database)
void	setId(String id)
void	setProperties(LinkedHashMap<String,String> properties)
String	toString()

Methods inherited from class org.biojava.nbio.core.sequence.features.Qualifier

getName, getValue, needsQuotes, setName, setNeedsQuotes, setValue

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DBReferenceInfo

public DBReferenceInfo(String database,
                       String id)

The source database and id

Parameters:

database -

id -

Method Detail

addProperty

public void addProperty(String type,
                        String value)

Add a property and type to associate with this DBReferenceInfo

Parameters:

type -

value -

getProperties

public LinkedHashMap<String,String> getProperties()

Get the properties

Returns:

the properties

setProperties

public void setProperties(LinkedHashMap<String,String> properties)

Parameters:

properties - the properties to set

getDatabase

public String getDatabase()

Returns:

the database

setDatabase

public void setDatabase(String database)

Parameters:

database - the database to set

getId

public String getId()

Returns:

the id

setId

public void setId(String id)

Parameters:

id - the id to set

toString

public String toString()

Overrides:

toString in class Qualifier