Package org.biojava.nbio.core.sequence.io

Class FastaSequenceParser

java.lang.Object

org.biojava.nbio.core.sequence.io.FastaSequenceParser

All Implemented Interfaces:

SequenceParserInterface

public class FastaSequenceParser
extends Object
implements SequenceParserInterface

Used to parse a stream of a fasta file to get the sequence

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor	Description
FastaSequenceParser()

Method Summary

Modifier and Type	Method	Description
String	getSequence(BufferedReader bufferedReader, int sequenceLength)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FastaSequenceParser

public FastaSequenceParser()

Method Details

getSequence

public String getSequence(BufferedReader bufferedReader,
 int sequenceLength)
                   throws IOException

Specified by:

getSequence in interface SequenceParserInterface

Parameters:

bufferedReader -

sequenceLength -

Returns:

Throws:

IOException