Uses of Interface
org.biojava.nbio.core.sequence.io.template.FastaHeaderFormatInterface
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Packages that use FastaHeaderFormatInterface Package Description org.biojava.nbio.core.sequence.io -
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Uses of FastaHeaderFormatInterface in org.biojava.nbio.core.sequence.io
Classes in org.biojava.nbio.core.sequence.io that implement FastaHeaderFormatInterface Modifier and Type Class Description class
GenericFastaHeaderFormat<S extends AbstractSequence<?>,C extends Compound>
We store the original header if the sequence is parsed from a fasta file and will use that exact sequence if we write out the sequences to a fasta file.Constructors in org.biojava.nbio.core.sequence.io with parameters of type FastaHeaderFormatInterface Constructor Description FastaGeneWriter(OutputStream os, Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase)
FastaGeneWriter(OutputStream os, Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase, int lineLength)
FastaWriter(OutputStream os, Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat)
Use default line length of 60FastaWriter(OutputStream os, Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat, int lineLength)
Set custom lineLength
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