Uses of Interface
org.biojava.nbio.core.sequence.io.template.SequenceParserInterface
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Packages that use SequenceParserInterface Package Description org.biojava.nbio.core.sequence.io org.biojava.nbio.core.sequence.loader -
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Uses of SequenceParserInterface in org.biojava.nbio.core.sequence.io
Classes in org.biojava.nbio.core.sequence.io that implement SequenceParserInterface Modifier and Type Class Description class
FastaSequenceParser
Used to parse a stream of a fasta file to get the sequenceclass
GenbankSequenceParser<S extends AbstractSequence<C>,C extends Compound>
Constructors in org.biojava.nbio.core.sequence.io with parameters of type SequenceParserInterface Constructor Description FileProxyDNASequenceCreator(File file, CompoundSet<NucleotideCompound> compoundSet, SequenceParserInterface sequenceParser)
Need File so that we can store full path name in SequenceFileProxyLoader for Random File access as a quick readFileProxyProteinSequenceCreator(File file, CompoundSet<AminoAcidCompound> compoundSet, SequenceParserInterface sequenceParser)
Need File so that we can store full path name in SequenceFileProxyLoader for Random File access as a quick readFileProxyRNASequenceCreator(File file, CompoundSet<NucleotideCompound> compoundSet, SequenceParserInterface sequenceParser)
Need File so that we can store full path name in SequenceFileProxyLoader for Random File access as a quick read -
Uses of SequenceParserInterface in org.biojava.nbio.core.sequence.loader
Constructors in org.biojava.nbio.core.sequence.loader with parameters of type SequenceParserInterface Constructor Description SequenceFileProxyLoader(File file, SequenceParserInterface sequenceParser, long sequenceStartIndex, int sequenceLength, CompoundSet<C> compoundSet)
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