Uses of Class
org.biojava.nbio.core.sequence.location.template.AbstractLocation
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Packages that use AbstractLocation Package Description org.biojava.nbio.core.sequence.features org.biojava.nbio.core.sequence.location -
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Uses of AbstractLocation in org.biojava.nbio.core.sequence.features
Methods in org.biojava.nbio.core.sequence.features that return AbstractLocation Modifier and Type Method Description AbstractLocation
AbstractFeature. getLocations()
A feature could be a single sequence position like a mutation or a post translational modification of an amino acid.AbstractLocation
FeatureDbReferenceInfo. getLocations()
AbstractLocation
FeatureInterface. getLocations()
The location(s) of this feature where the location should contain a reference to parent and sequence etc.Methods in org.biojava.nbio.core.sequence.features with parameters of type AbstractLocation Modifier and Type Method Description void
AbstractFeature. setLocation(AbstractLocation loc)
A feature could be a single sequence position like a mutation or a post translational modification of an amino acid.void
FeatureDbReferenceInfo. setLocation(AbstractLocation loc)
void
FeatureInterface. setLocation(AbstractLocation loc)
The new location for this feature. -
Uses of AbstractLocation in org.biojava.nbio.core.sequence.location
Subclasses of AbstractLocation in org.biojava.nbio.core.sequence.location Modifier and Type Class Description static class
InsdcLocations.BondLocation
Used to represent bond locations equivalent to bond(7,8) or bond(7).static class
InsdcLocations.GroupLocation
Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined.static class
InsdcLocations.OneOfLocation
Deprecated in INSDC; refers to a set of locations of which one location could be valid e.g. one-of(location, location, location).static class
InsdcLocations.OrderLocation
Used to describe a 5' to 3' ordering but no firm assurance it is correctclass
SequenceLocation<S extends AbstractSequence<C>,C extends Compound>
A location in a sequence that keeps a reference to its parent sequenceclass
SimpleLocation
Very basic implementation of the Location interface which defines a series of simple constructors.
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