Package org.biojava.nbio.core.sequence.template

Class AbstractCompound

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompound

All Implemented Interfaces:

Compound

Direct Known Subclasses:

AminoAcidCompound, CodonCompound, NucleotideCompound

public abstract class AbstractCompound
extends Object
implements Compound

The details of a Compound

Author:

Andy Yates

Constructor Summary

Constructors

Constructor	Description
AbstractCompound()
AbstractCompound(String base)

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)
boolean	equalsIgnoreCase(Compound compound)
String	getBase()
String	getDescription()
String	getLongName()
Float	getMolecularWeight()
String	getShortName()
String	getUpperedBase()
int	hashCode()
void	setDescription(String description)
void	setLongName(String longName)
void	setMolecularWeight(Float molecularWeight)
void	setShortName(String shortName)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

AbstractCompound

public AbstractCompound()

AbstractCompound

public AbstractCompound(String base)

Method Details

getBase

public String getBase()

getUpperedBase

public String getUpperedBase()

getDescription

public String getDescription()

Specified by:

getDescription in interface Compound

setDescription

public void setDescription(String description)

Specified by:

setDescription in interface Compound

getShortName

public String getShortName()

Specified by:

getShortName in interface Compound

setShortName

public void setShortName(String shortName)

Specified by:

setShortName in interface Compound

getLongName

public String getLongName()

Specified by:

getLongName in interface Compound

setLongName

public void setLongName(String longName)

Specified by:

setLongName in interface Compound

getMolecularWeight

public Float getMolecularWeight()

Specified by:

getMolecularWeight in interface Compound

setMolecularWeight

public void setMolecularWeight(Float molecularWeight)

Specified by:

setMolecularWeight in interface Compound

toString

public String toString()

Specified by:

toString in interface Compound

Overrides:

toString in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equalsIgnoreCase

public boolean equalsIgnoreCase(Compound compound)

Specified by:

equalsIgnoreCase in interface Compound