Package org.biojava.nbio.genome.parsers.gff

Class FeatureHelper

java.lang.Object

org.biojava.nbio.genome.parsers.gff.FeatureHelper

public class FeatureHelper
extends Object

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor	Description
FeatureHelper()

Method Summary

Modifier and Type	Method	Description
static LinkedHashMap<String,FeatureList>	buildFeatureAtrributeIndex(String attribute, FeatureList list)	Build a list of individual features to allow easy indexing and to avoid iterating through large genome gff3 files The index for the returned HashMap is the value of the attribute used to build the index

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureHelper

public FeatureHelper()

Method Detail

buildFeatureAtrributeIndex

public static LinkedHashMap<String,FeatureList> buildFeatureAtrributeIndex(String attribute,
                                                                                 FeatureList list)

Build a list of individual features to allow easy indexing and to avoid iterating through large genome gff3 files The index for the returned HashMap is the value of the attribute used to build the index

Parameters:

attribute -

list -

Returns: