Class TwoBitParser

  • All Implemented Interfaces:
    Closeable, AutoCloseable

    public class TwoBitParser
    extends InputStream
    downloaded from Class is a parser of UCSC Genome Browser file format .2bit used to store nucleotide sequence information. This class extends InputStream and can be used as it after choosing one of names of containing sequences. This parser can be used to do some work like UCSC tool named twoBitToFa. For it just run this class with input file path as single parameter and set stdout stream into output file. If you have any problems or ideas don't hesitate to contact me through email: rsutormin[at]
    Roman Sutormin