Package org.biojava.nbio.protmod

Interface ProteinModification

All Known Implementing Classes:

ProteinModificationImpl

public interface ProteinModification

This interface defines information about a specific protein modification.

Since:

3.0

Author:

Jianjiong Gao

Method Summary

Modifier and Type	Method	Description
ModificationCategory	getCategory()
ModificationCondition	getCondition()
String	getDescription()
String	getFormula()
String	getId()
Set<String>	getKeywords()
ModificationOccurrenceType	getOccurrenceType()
String	getPdbccId()
String	getPdbccName()
String	getPsimodId()
String	getPsimodName()
String	getResidId()
String	getResidName()
String	getSystematicName()

Method Details

getId

String getId()

Returns:

modification id.

getPdbccId

String getPdbccId()

Returns:

Protein Data Bank Chemical Component ID.

getPdbccName

String getPdbccName()

Returns:

Protein Data Bank Chemical Component name.

getResidId

String getResidId()

Returns:

RESID ID.

getResidName

String getResidName()

Returns:

RESID name.

getPsimodId

String getPsimodId()

Returns:

PSI-MOD ID.

getPsimodName

String getPsimodName()

Returns:

PSI-MOD name.

getSystematicName

String getSystematicName()

Returns:

Systematic name.

getDescription

String getDescription()

Returns:

Description.

getKeywords

Set<String> getKeywords()

Returns:

a set of keywords.

getCondition

ModificationCondition getCondition()

Returns:

ModificationCondition

getFormula

String getFormula()

Returns:

formula of the modified residue.

getCategory

ModificationCategory getCategory()

Returns:

the modification category.

getOccurrenceType

ModificationOccurrenceType getOccurrenceType()

Returns:

the modification occurrence type.