Package org.biojava.nbio.structure.align.ce

Class CeSideChainUserArgumentProcessor

java.lang.Object

org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor

org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor

org.biojava.nbio.structure.align.ce.CeSideChainUserArgumentProcessor

All Implemented Interfaces:

UserArgumentProcessor

public class CeSideChainUserArgumentProcessor
extends CeUserArgumentProcessor

Nested Class Summary

Nested classes/interfaces inherited from class org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor

CeUserArgumentProcessor.CeStartupParams

Field Summary

Fields inherited from class org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor

mandatoryArgs, newline, params

Constructor Summary

Constructors

Constructor	Description
CeSideChainUserArgumentProcessor()

Method Summary

Modifier and Type	Method	Description
StructureAlignment	getAlgorithm()
String	getDbSearchLegend()
Object	getParameters()

Methods inherited from class org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor

getStartupParametersInstance

Methods inherited from class org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor

getDbSearchResult, printAboutMe, printHelp, process

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CeSideChainUserArgumentProcessor

public CeSideChainUserArgumentProcessor()

Method Details

getAlgorithm

public StructureAlignment getAlgorithm()

Overrides:

getAlgorithm in class CeUserArgumentProcessor

getParameters

public Object getParameters()

Overrides:

getParameters in class CeUserArgumentProcessor

getDbSearchLegend

public String getDbSearchLegend()

Overrides:

getDbSearchLegend in class CeUserArgumentProcessor