Class StructureAlignmentOptimizer

    • Constructor Detail

      • StructureAlignmentOptimizer

        public StructureAlignmentOptimizer​(int b1,
                                           int end1,
                                           Atom[] c1,
                                           int b2,
                                           int end2,
                                           Atom[] c2,
                                           int iniLen,
                                           int[][] iniSet)
                                    throws StructureException
        optimize the structural alignment by update the equivalent residues and then run dynamic programming input: len1 the length of structure 1; c1: the structure information of 1 len2 the length of structure 2; c2: the structure information of 2 iniLen and iniSet is the length and list of initial equivalent residues