Package org.biojava.nbio.structure.align.gui

Class MySaveFileListener

java.lang.Object

org.biojava.nbio.structure.align.gui.MySaveFileListener

All Implemented Interfaces:

ActionListener, EventListener

public class MySaveFileListener
extends Object
implements ActionListener

Save an alignment to a specified File by the user. The alignment to be saved depends on the constructor used to instantiate this class, so that AFPChains and MultipleAlignments can be saved.

The format to save the alignment depends on the Frame that generated the Action: from a sequence alignment a FatCat or FASTA formats are saved, and from a Jmol view an XML format is saved.

Version:

2.0 - adapted for MultipleAlignments

Author:

Aleix Lafita

Constructor Summary

Constructors

Constructor	Description
MySaveFileListener(AFPChain afpChain)
MySaveFileListener(AFPChain afpChain, MultipleAlignment msa)	Constructor to avoid checking which of the two is null before instantiating this class.
MySaveFileListener(MultipleAlignment msa)

Method Summary

Modifier and Type	Method	Description
void	actionPerformed(ActionEvent evt)
void	setTextOutput(boolean text)	If true, the alignment format saved will be a text output (FASTA for MultipleAlignments and FatCat for pairwise alignments)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MySaveFileListener

public MySaveFileListener(AFPChain afpChain)

MySaveFileListener

public MySaveFileListener(MultipleAlignment msa)

MySaveFileListener

public MySaveFileListener(AFPChain afpChain,
 MultipleAlignment msa)

Constructor to avoid checking which of the two is null before instantiating this class. One of the two, or both, have to be null. If both are different than null the MultipleAlignment will be saved only.

Parameters:

afpChain -

msa -

Method Details

actionPerformed

public void actionPerformed(ActionEvent evt)

Specified by:

actionPerformed in interface ActionListener

setTextOutput

public void setTextOutput(boolean text)

If true, the alignment format saved will be a text output (FASTA for MultipleAlignments and FatCat for pairwise alignments)

Parameters:

text - if true the output will be text format