Class Summary Class Description AFPChainCoordManager AligPanelA JPanel that can display an AFPChain in a nice way and interact with Jmol. AligPanelMouseMotionListener MultipleAlignmentCoordManagerGeneralization of the Coodinate Manager to include an arbitrary number of sequences (lines) for MultipleAlignment visualization. MultipleAligPanelA JPanel that can display the sequence alignment of a
MultipleAlignmentin a nice way and interact with Jmol by selecting the aligned atoms of the sequence selection.
MultipleAligPanelMouseMotionListenerMouse Motion Listener for the
MultipleAligPanel, which provides methods to obtain positions of the mouse and connect them to the sequence alignment positions using the information in
MultipleStatusDisplayThis class provides information of the selected positions in the