Class JointFragments

  • public class JointFragments
    extends Object
    A utility class that defines which set of atoms are considered to be on equivalent positions.
    • Method Detail

      • setIdxlist

        public void setIdxlist​(List<int[]> idxs)
        Stores the alignment between the residues of several fragments. Each int[] stores the residue numbers of several equivalent residues.
      • getRms

        public double getRms()
      • setRms

        public void setRms​(double rms)
      • add

        public void add​(int p1,
                        int p2,
                        int start,
                        int end)