Package org.biojava.nbio.structure.align.helper

Class JointFragments

java.lang.Object

org.biojava.nbio.structure.align.helper.JointFragments

public class JointFragments
extends Object

A utility class that defines which set of atoms are considered to be on equivalent positions.

Constructor Summary

Constructors

Constructor	Description
JointFragments()

Method Summary

Modifier and Type	Method	Description
void	add(int p1, int p2, int start, int end)
List<int[]>	getIdxlist()
double	getRms()
void	setIdxlist(List<int[]> idxs)	Stores the alignment between the residues of several fragments.
void	setRms(double rms)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

JointFragments

public JointFragments()

Method Details

setIdxlist

public void setIdxlist(List<int[]> idxs)

Stores the alignment between the residues of several fragments. Each int[] stores the residue numbers of several equivalent residues.

getRms

public double getRms()

setRms

public void setRms(double rms)

getIdxlist

public List<int[]> getIdxlist()

add

public void add(int p1,
 int p2,
 int start,
 int end)

toString

public String toString()

Overrides:

toString in class Object