Class MultipleMcMain

  • All Implemented Interfaces:

    public class MultipleMcMain
    extends Object
    implements MultipleStructureAligner
    Main class of the Java implementation of the Combinatorial Extension - Monte Carlo (CEMC) Algorithm, as it was originally described by C.Guda, E.D.Scheeff, P.E. Bourne and I.N. Shindyalov (2001). The original CEMC paper is available from here.

    This implementation is a generalized version that allows any pairwise structure alignment algorithm as input, thus supporting any non-topological or flexible alignment. The seed can also directly be the input for the optimization. For that, look at MultipleMcOptimizer.

    A Demo on how to use the algorithm can be found in the demo package.

    Aleix Lafita